中国自然疫源地鼠疫耶尔森菌全基因组序列。
Complete genome sequences of Yersinia pestis from natural foci in China.
机构信息
State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China.
出版信息
J Bacteriol. 2010 Jul;192(13):3551-2. doi: 10.1128/JB.00340-10. Epub 2010 May 7.
Abstract
Yersinia pestis, the causative agent of plague, is a deadly bacterium that affects humans. Strain D106004 was isolated from a new plague focus in Yulong County, China, in 2006. To gain insights into the epidemic origin, we have sequenced the genomes of D106004 and strains Z176003 and D182038, isolated from neighboring regions.
摘要
鼠疫耶尔森菌是引起鼠疫的病原体，是一种致命的细菌，会影响人类。2006 年，从中国玉龙县的一个新的鼠疫疫源地分离到菌株 D106004。为了深入了解疫情的起源，我们对来自邻近地区的菌株 Z176003 和 D182038 以及 D106004 进行了基因组测序。
相似文献
1
Complete genome sequences of Yersinia pestis from natural foci in China.中国自然疫源地鼠疫耶尔森菌全基因组序列。
J Bacteriol. 2010 Jul;192(13):3551-2. doi: 10.1128/JB.00340-10. Epub 2010 May 7.
2
Genome rearrangements of completely sequenced strains of Yersinia pestis.鼠疫耶尔森氏菌完全测序菌株的基因组重排。
J Clin Microbiol. 2010 May;48(5):1619-23. doi: 10.1128/JCM.01473-09. Epub 2010 Mar 3.
3
Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China.来自中国鼠疫自然疫源地的鼠疫耶尔森氏菌分离株的基因组序列草图
J Bacteriol. 2009 Dec;191(24):7628-9. doi: 10.1128/JB.01227-09. Epub 2009 Oct 9.
4
Comparative genomic analysis of gene variations of two Chinese Yersinia pestis isolates from vaccine strain EV76.比较 EV76 疫苗株来源的两株中国鼠疫耶尔森氏菌分离株的基因变异的基因组分析。
Biomed Environ Sci. 2012 Aug;25(4):440-8. doi: 10.3967/0895-3988.2012.04.009.
5
[Study on the identification characteristics of rRNA genes on Yersinia pestis].[鼠疫耶尔森菌rRNA基因鉴定特征的研究]
Zhonghua Liu Xing Bing Xue Za Zhi. 2011 Apr;32(4):366-9.
6
Draft genome sequence of Yersinia pestis strain 2501, an isolate from the great gerbil plague focus in Xinjiang, China.鼠疫耶尔森菌 2501 株的基因组草图序列，该菌株分离自中国新疆大沙鼠鼠疫自然疫源地。
J Bacteriol. 2012 Oct;194(19):5447-8. doi: 10.1128/JB.01150-12.
7
Chromosomal rearrangement features of Yersinia pestis strains from natural plague foci in China.中国自然鼠疫疫源地鼠疫菌菌株的染色体重排特征。
Am J Trop Med Hyg. 2014 Oct;91(4):722-8. doi: 10.4269/ajtmh.13-0491. Epub 2014 Aug 11.
8
MLVA distribution characteristics of Yersinia pestis in China and the correlation analysis.中国鼠疫耶尔森菌多位点可变数目串联重复序列分析的分布特征及相关性分析
BMC Microbiol. 2009 Sep 23;9:205. doi: 10.1186/1471-2180-9-205.
9
Spatial variation of Yersinia pestis from Yunnan Province of China.中国云南省鼠疫耶尔森菌的空间变异
Am J Trop Med Hyg. 2009 Oct;81(4):714-7. doi: 10.4269/ajtmh.2009.09-0174.
10
Ten years of surveillance of the Yulong plague focus in China and the molecular typing and source tracing of the isolates.十年间对中国玉龙鼠疫疫源地的监测以及对分离株的分子分型和溯源。
PLoS Negl Trop Dis. 2018 Mar 30;12(3):e0006352. doi: 10.1371/journal.pntd.0006352. eCollection 2018 Mar.
引用本文的文献
1
Epidemiological Characteristics of Human and Animal Plague in Yunnan Province, China, 1950 to 2020.中国云南省 1950 年至 2020 年人间和动物鼠疫的流行病学特征。
Microbiol Spectr. 2022 Dec 21;10(6):e0166222. doi: 10.1128/spectrum.01662-22. Epub 2022 Oct 11.
2
Yersinia pestis: the Natural History of Plague.鼠疫耶尔森菌：鼠疫的自然史。
Clin Microbiol Rev. 2020 Dec 9;34(1). doi: 10.1128/CMR.00044-19. Print 2020 Dec 16.
3
Soil salinity and aridity specify plague foci in the United States of America.土壤盐渍化和干旱使美国鼠疫疫源地呈现点状分布。
Sci Rep. 2020 Apr 10;10(1):6186. doi: 10.1038/s41598-020-63211-4.
4
Ancient pathogen genomics as an emerging tool for infectious disease research.古老病原体基因组学作为传染病研究的新兴工具。
Nat Rev Genet. 2019 Jun;20(6):323-340. doi: 10.1038/s41576-019-0119-1.
5
Human plague associated with Tibetan sheep originates in marmots.人类鼠疫与藏绵羊有关，起源于旱獭。
PLoS Negl Trop Dis. 2018 Aug 16;12(8):e0006635. doi: 10.1371/journal.pntd.0006635. eCollection 2018 Aug.
6
Ten years of surveillance of the Yulong plague focus in China and the molecular typing and source tracing of the isolates.十年间对中国玉龙鼠疫疫源地的监测以及对分离株的分子分型和溯源。
PLoS Negl Trop Dis. 2018 Mar 30;12(3):e0006352. doi: 10.1371/journal.pntd.0006352. eCollection 2018 Mar.
7
Chromosomal rearrangement features of Yersinia pestis strains from natural plague foci in China.中国自然鼠疫疫源地鼠疫菌菌株的染色体重排特征。
Am J Trop Med Hyg. 2014 Oct;91(4):722-8. doi: 10.4269/ajtmh.13-0491. Epub 2014 Aug 11.
8
Thousands of missed genes found in bacterial genomes and their analysis with COMBREX.在细菌基因组中发现数千个缺失的基因及其与 COMBREX 的分析。
Biol Direct. 2012 Oct 30;7:37. doi: 10.1186/1745-6150-7-37.
9
Solving the Problem: Genome Annotation Standards before the Data Deluge.解决问题：数据洪流之前的基因组注释标准
Stand Genomic Sci. 2011 Oct 15;5(1):168-93. doi: 10.4056/sigs.2084864. Epub 2011 Oct 1.
10
Delineation and analysis of chromosomal regions specifying Yersinia pestis.鼠疫耶尔森氏菌染色体区域的划定与分析。
Infect Immun. 2010 Sep;78(9):3930-41. doi: 10.1128/IAI.00281-10. Epub 2010 Jul 6.
本文引用的文献
1
Genome rearrangements of completely sequenced strains of Yersinia pestis.鼠疫耶尔森氏菌完全测序菌株的基因组重排。
J Clin Microbiol. 2010 May;48(5):1619-23. doi: 10.1128/JCM.01473-09. Epub 2010 Mar 3.
2
Spatial variation of Yersinia pestis from Yunnan Province of China.中国云南省鼠疫耶尔森菌的空间变异
Am J Trop Med Hyg. 2009 Oct;81(4):714-7. doi: 10.4269/ajtmh.2009.09-0174.
3
MLVA distribution characteristics of Yersinia pestis in China and the correlation analysis.中国鼠疫耶尔森菌多位点可变数目串联重复序列分析的分布特征及相关性分析
BMC Microbiol. 2009 Sep 23;9:205. doi: 10.1186/1471-2180-9-205.
4
Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America.鼠疫耶尔森氏菌在小时间尺度上的进化：来自北美的全基因组序列比较。
PLoS One. 2007 Aug 22;2(8):e770. doi: 10.1371/journal.pone.0000770.
5
A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis.北美鼠疫耶尔森菌基因组草图序列：单核苷酸多态性和系统发育分析。
PLoS One. 2007 Feb 21;2(2):e220. doi: 10.1371/journal.pone.0000220.
6
Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen.鼠疫杆菌古典型菌株和尼泊尔516菌株的全基因组序列：新兴病原体基因缩减的证据
J Bacteriol. 2006 Jun;188(12):4453-63. doi: 10.1128/JB.00124-06.
7
Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans.对人类无毒力的鼠疫耶尔森氏菌菌株91001的全基因组序列
DNA Res. 2004 Jun 30;11(3):179-97. doi: 10.1093/dnares/11.3.179.
8
Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea.氨氧化细菌兼专性化能自养生物欧洲亚硝化单胞菌的全基因组序列。
J Bacteriol. 2003 May;185(9):2759-73. doi: 10.1128/JB.185.9.2759-2773.2003.
9
Genome sequence of Yersinia pestis KIM.鼠疫杆菌KIM株的基因组序列。
J Bacteriol. 2002 Aug;184(16):4601-11. doi: 10.1128/JB.184.16.4601-4611.2002.
10
Genome sequence of Yersinia pestis, the causative agent of plague.鼠疫病原体——鼠疫耶尔森菌的基因组序列。
Nature. 2001 Oct 4;413(6855):523-7. doi: 10.1038/35097083.
Zotero 插件