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鉴定伞菌属中的一种假设蛋白为亚硝烷氧化酶。

Identification of a hypothetical protein from Podospora anserina as a nitroalkane oxidase.

机构信息

Department of Biochemistry, University of Texas Health Science Center, San Antonio, Texas 78229, USA.

出版信息

Biochemistry. 2010 Jun 22;49(24):5035-41. doi: 10.1021/bi100610e.

Abstract

The flavoprotein nitroalkane oxidase (NAO) from Fusarium oxysporum catalyzes the oxidation of primary and secondary nitroalkanes to their respective aldehydes and ketones. Structurally, the enzyme is a member of the acyl-CoA dehydrogenase superfamily. To date no enzymes other than that from F. oxysporum have been annotated as NAOs. To identify additional potential NAOs, the available database was searched for enzymes in which the active site residues Asp402, Arg409, and Ser276 were conserved. Of the several fungal enzymes identified in this fashion, PODANSg2158 from Podospora anserina was selected for expression and characterization. The recombinant enzyme is a flavoprotein with activity on nitroalkanes comparable to the F. oxysporum NAO, although the substrate specificity is somewhat different. Asp399, Arg406, and Ser273 in PODANSg2158 correspond to the active site triad in F. oxysporum NAO. The k(cat)/K(M)-pH profile with nitroethane shows a pK(a) of 5.9 that is assigned to Asp399 as the active site base. Mutation of Asp399 to asparagine decreases the k(cat)/K(M) value for nitroethane over 2 orders of magnitude. The R406K and S373A mutations decrease this kinetic parameter by 64- and 3-fold, respectively. The structure of PODANSg2158 has been determined at a resolution of 2.0 A, confirming its identification as an NAO.

摘要

来自尖孢镰刀菌的黄素蛋白亚硝烷氧化酶(NAO)催化伯硝烷和仲硝烷氧化为相应的醛和酮。从结构上讲,该酶是酰基辅酶 A 脱氢酶超家族的成员。迄今为止,除了来自尖孢镰刀菌的酶之外,尚未有其他酶被注释为 NAO。为了鉴定其他潜在的 NAO,在可用的数据库中搜索了保守的活性位点残基 Asp402、Arg409 和 Ser276 的酶。以这种方式鉴定了几种真菌酶,其中来自 Podospora anserina 的 PODANSg2158 被选择进行表达和表征。重组酶是一种黄素蛋白,对硝基烷的活性与尖孢镰刀菌的 NAO 相当,尽管底物特异性略有不同。PODANSg2158 中的 Asp399、Arg406 和 Ser273 对应于尖孢镰刀菌 NAO 的活性位点三联体。用硝基乙烷进行的 k(cat)/K(M)-pH 图谱显示 pK(a)为 5.9,该值被指定为活性位点碱基 Asp399。将 Asp399突变为天冬酰胺会使硝基乙烷的 k(cat)/K(M)值降低 2 个数量级以上。R406K 和 S373A 突变分别使该动力学参数降低 64 倍和 3 倍。PODANSg2158 的结构已确定为 2.0 A 的分辨率,证实了其作为 NAO 的鉴定。

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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
A lysine conserved in the monoamine oxidase family is involved in oxidation of the reduced flavin in mouse polyamine oxidase.
Arch Biochem Biophys. 2010 Jun 15;498(2):83-8. doi: 10.1016/j.abb.2010.04.015. Epub 2010 Apr 22.
3
PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21. doi: 10.1107/S0907444909052925. Epub 2010 Jan 22.
4
Differential quantum tunneling contributions in nitroalkane oxidase catalyzed and the uncatalyzed proton transfer reaction.
Proc Natl Acad Sci U S A. 2009 Dec 8;106(49):20734-9. doi: 10.1073/pnas.0911416106. Epub 2009 Nov 19.
5
Oxidation of amines by flavoproteins.
Arch Biochem Biophys. 2010 Jan 1;493(1):13-25. doi: 10.1016/j.abb.2009.07.019. Epub 2009 Aug 3.
6
Phaser crystallographic software.
J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674. doi: 10.1107/S0021889807021206. Epub 2007 Jul 13.
8
Crystal structures of intermediates in the nitroalkane oxidase reaction.
Biochemistry. 2009 Apr 21;48(15):3407-16. doi: 10.1021/bi8023042.
10

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