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Microdynamics and criticality of adaptive regulatory networks.
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Design of genetic switches with only positive feedback loops.
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Criticality is an emergent property of genetic networks that exhibit evolvability.
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The distribution of fitness effects during adaptive walks using a simple genetic network.
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Adaptive walk on complex networks.
Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Jun;71(6 Pt 1):061921. doi: 10.1103/PhysRevE.71.061921. Epub 2005 Jun 28.
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Adaptive Local Information Transfer in Random Boolean Networks.
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Evolving phenotypic networks in silico.
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The changing geometry of a fitness landscape along an adaptive walk.
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Collective predator evasion: Putting the criticality hypothesis to the test.
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Component response rate variation underlies the stability of highly complex finite systems.
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Phenotypic heterogeneity and evolution of melanoma cells associated with targeted therapy resistance.
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Analytical investigation of self-organized criticality in neural networks.
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Criticality is an emergent property of genetic networks that exhibit evolvability.
PLoS Comput Biol. 2012;8(9):e1002669. doi: 10.1371/journal.pcbi.1002669. Epub 2012 Sep 6.
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Introduction to network analysis in systems biology.
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本文引用的文献

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Emergence and decline of scientific paradigms.
Phys Rev Lett. 2011 Feb 4;106(5):058701. doi: 10.1103/PhysRevLett.106.058701. Epub 2011 Feb 2.
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Adaptive self-organization in a realistic neural network model.
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Dec;80(6 Pt 1):061917. doi: 10.1103/PhysRevE.80.061917. Epub 2009 Dec 23.
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Self-tuned critical anti-Hebbian networks.
Phys Rev Lett. 2009 Jun 26;102(25):258102. doi: 10.1103/PhysRevLett.102.258102. Epub 2009 Jun 22.
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Microdynamics in stationary complex networks.
Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8847-52. doi: 10.1073/pnas.0811113106. Epub 2009 May 19.
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Ordered cyclic motifs contribute to dynamic stability in biological and engineered networks.
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Critical dynamics in genetic regulatory networks: examples from four kingdoms.
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Gene expression dynamics in the macrophage exhibit criticality.
Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):1897-900. doi: 10.1073/pnas.0711525105. Epub 2008 Feb 4.
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Adaptive coevolutionary networks: a review.
J R Soc Interface. 2008 Mar 6;5(20):259-71. doi: 10.1098/rsif.2007.1229.
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Emergent criticality from coevolution in random Boolean networks.
Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Oct;74(4 Pt 1):041910. doi: 10.1103/PhysRevE.74.041910. Epub 2006 Oct 17.
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Rank clocks.
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