Gavezzotti Angelo
Dipartimento di Chimica Strutturale e Stereochimica Inorganica, Università di Milano, via Venezian 21, 20133 Milano, Italy.
Acta Crystallogr B. 2010 Jun;66(Pt 3):396-406. doi: 10.1107/S0108768110008074. Epub 2010 May 6.
A quantitative analysis of relative stabilities in organic crystal structures is possible by means of reliable calculations of interaction energies between pairs of molecules. Such calculations have been performed by the PIXEL method for 1108 non-ionic and 98 ionic organic crystals, yielding total energies and separate Coulombic polarization and dispersive contributions. A classification of molecule-molecule interactions emerges based on pair energy and its first derivative, the interaction force, which is estimated here explicitly along an approximate stretching path. When molecular separation is not at the minimum-energy value, as frequently happens, forces may be attractive or repulsive. This information provides a fine structural fingerprint and may be relevant to the mechanical properties of materials. The calculations show that the first coordination shell includes destabilizing contacts in approximately 9% of crystal structures for compounds with highly polar chemical groups (e.g. CN, NO(2), SO(2)). Calculations also show many pair contacts with weakly stabilizing (neutral) energies; such fine modulation is presumably what makes crystal structure prediction so difficult. Ionic organic salts or zwitterions, including small peptides, show a Madelung-mode pairing of opposite ions where the total lattice energy is stabilized from sums of strongly repulsive and strongly attractive interactions. No obvious relationships between atom-atom distances and interaction energies emerge, so analyses of crystal packing in terms of geometrical parameters alone should be conducted with due care.
通过可靠地计算分子对之间的相互作用能,可以对有机晶体结构中的相对稳定性进行定量分析。已经使用PIXEL方法对1108种非离子有机晶体和98种离子有机晶体进行了此类计算,得出了总能量以及单独的库仑极化和色散贡献。基于对能量及其一阶导数(相互作用力)出现了分子间相互作用的分类,这里沿着近似拉伸路径明确估计了相互作用力。当分子间距不在最小能量值时(这种情况经常发生),力可能是吸引性的或排斥性的。该信息提供了精细的结构指纹,并且可能与材料的机械性能相关。计算表明,对于具有高极性化学基团(例如CN、NO₂、SO₂)的化合物,在大约9%的晶体结构中,第一配位层包含不稳定的接触。计算还表明存在许多具有弱稳定(中性)能量的对接触;这种精细调节大概就是晶体结构预测如此困难的原因。离子有机盐或两性离子,包括小肽,显示出相反离子的马德隆模式配对,其中总晶格能量通过强排斥和强吸引相互作用的总和而稳定。原子间距离与相互作用能之间没有明显的关系,因此仅根据几何参数对晶体堆积进行分析时应谨慎进行。