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一种用于短氢键的量子晶体学方法。

A quantum crystallographic approach to short hydrogen bonds.

作者信息

Saunders Lucy K, Pallipurath Anuradha R, Gutmann Matthias J, Nowell Harriott, Zhang Ningjin, Allan David R

机构信息

Diamond Light Source, Harwell Science and Innovation Campus Didcot OX11 0DE UK

School of Chemical and Process Engineering, University of Leeds Leeds LS2 9JT UK

出版信息

CrystEngComm. 2021 Aug 13;23(35):6180-6190. doi: 10.1039/d1ce00355k. eCollection 2021 Sep 13.

DOI:10.1039/d1ce00355k
PMID:34588923
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8436739/
Abstract

In this work we use high-resolution synchrotron X-ray diffraction for electron density mapping, in conjunction with modelling, to study short O-H⋯O and O-H⋯O hydrogen bonds whose behaviour is known to be tuneable by temperature. The short hydrogen bonds have donor-acceptor distances in the region of 2.45 Å and are formed in substituted urea and organic acid molecular complexes of ,'-dimethylurea oxalic acid 2 : 1 (), ,-dimethylurea 2,4-dinitrobenzoate 1 : 1 () and ,-dimethylurea 3,5-dinitrobenzoic acid 2 : 2 (). From the combined analyses, these complexes are found to fall within the salt-cocrystal continuum and exhibit short hydrogen bonds that can be characterised as both strong and electrostatic (, ) or very strong with a significant covalent contribution (). An additional charge assisted component is found to be important in distinguishing the relatively uncommon O-H⋯O pseudo-covalent interaction from a typical strong hydrogen bond. The electron density is found to be sensitive to the extent of static proton transfer, presenting it as a useful parameter in the study of the salt-cocrystal continuum. From complementary calculated hydrogen atom potentials, we attribute changes in proton position to the molecular environment. Calculated potentials also show zero barrier to proton migration, forming an 'energy slide' between the donor and acceptor atoms. The better fundamental understanding of the short hydrogen bond in the 'zone of fluctuation' presented in a salt-cocrystal continuum, enabled by studies like this, provide greater insight into their related properties and can have implications in the regulation of pharmaceutical materials.

摘要

在本研究中,我们使用高分辨率同步加速器X射线衍射进行电子密度映射,并结合建模,以研究短O-H⋯O和O-H⋯O氢键,已知其行为可随温度调节。这些短氢键的供体-受体距离在2.45 Å左右,形成于'-二甲基脲草酸2 : 1()、'-二甲基脲2,4-二硝基苯甲酸酯1 : 1()和'-二甲基脲3,5-二硝基苯甲酸2 : 2()的取代脲和有机酸分子复合物中。通过综合分析,发现这些复合物属于盐-共晶连续体,且呈现出可被表征为强且具有静电作用(, )或具有显著共价贡献的非常强的短氢键()。发现一个额外的电荷辅助成分对于区分相对罕见的O-H⋯O准共价相互作用与典型的强氢键很重要。发现电子密度对静态质子转移的程度敏感,使其成为研究盐-共晶连续体的一个有用参数。从互补计算的氢原子势能来看,我们将质子位置的变化归因于分子环境。计算得到的势能还显示质子迁移没有势垒,在供体和受体原子之间形成了一个“能量滑梯”。通过这样的研究,对盐-共晶连续体中呈现的“波动区域”内的短氢键有了更好的基础理解,这为深入了解其相关性质提供了更多见解,并可能对药物材料的调控产生影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5b79/8436739/e86a4635ecf9/d1ce00355k-f8.jpg
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