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南海雷菌(Rheinheimera nanhaiensis)sp. nov.,从海洋沉积物中分离得到,修订了 2002 年 Brettar 等人描述的 Rheinheimera 属和 2007 年 Merchant 等人修订的描述。

Rheinheimera nanhaiensis sp. nov., isolated from marine sediments, and emended description of the genus Rheinheimera Brettar et al. 2002 emend. Merchant et al. 2007.

机构信息

College of Chemical and Environmental Engineering, Shandong University of Science and Technology, Qingdao 266510, PR China.

The State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong University, Jinan 250100, PR China.

出版信息

Int J Syst Evol Microbiol. 2011 May;61(Pt 5):1016-1022. doi: 10.1099/ijs.0.019281-0. Epub 2010 May 28.

Abstract

A Gram-negative, facultatively aerobic, oxidase- and catalase-positive, rod-shaped bacterium, designated strain E407-8(T), was isolated from a sediment sample from the South China Sea. Phylogenetic analysis of the 16S rRNA gene sequence revealed that strain E407-8(T) was affiliated with the genus Rheinheimera, sharing the highest sequence similarity with Rheinheimera pacifica KMM 1406(T) (97.5 %) and Rheinheimera aquimaris SW-353(T) (97.4 %) and showing less than 97 % sequence similarity to the type strains of other recognized Rheinheimera species. Levels of DNA-DNA relatedness of strain E407-8(T) to R. pacifica DSM 17616(T) and R. aquimaris JCM 14331(T) were 25.2 % (25.3 % in the duplicate measurement) and 9.4 % (6.5 %), respectively. The bacterium could grow at 10-48 °C (optimum 37 °C) and in the presence of 0-8 % (w/v) NaCl (optimum 0.5-2.5 %). The major cellular fatty acids of strain E407-8(T) were summed feature 3 (C(16 : 1)ω7c and/or iso-C(15 : 0) 2-OH), C(17 : 1)ω8c, C(16 : 0) and C(18 : 1)ω7c. The predominant respiratory quinone was ubiquinone Q-8. The DNA G+C content was 51.0 mol%. Based on the results of our polyphasic taxonomic study, strain E407-8(T) represents a novel species in the genus Rheinheimera, for which the name Rheinheimera nanhaiensis sp. nov. is proposed. The type strain is E407-8(T) ( = CCTCC AB 209089(T)  = KACC 14030(T)). An emended description of the genus Rheinheimera Brettar et al. 2002 emend. Merchant et al. 2007 is also proposed.

摘要

一株革兰氏阴性、兼性需氧、氧化酶和接触酶阳性、杆状的细菌,被命名为 E407-8(T) 菌株,从南海的沉积物样本中分离得到。16S rRNA 基因序列的系统发育分析表明,E407-8(T) 菌株与 Rheinheimera 属有关,与 Rheinheimera pacifica KMM 1406(T)(97.5%)和 Rheinheimera aquimaris SW-353(T)(97.4%)的序列相似度最高,与其他公认的 Rheinheimera 种的模式菌株的序列相似度低于 97%。E407-8(T) 菌株与 Rheinheimera pacifica DSM 17616(T) 和 Rheinheimera aquimaris JCM 14331(T) 的 DNA-DNA 同源性水平分别为 25.2%(重复测量为 25.3%)和 9.4%(6.5%)。该细菌可在 10-48°C(最佳温度 37°C)和 0-8%(w/v)NaCl(最佳 0.5-2.5%)的条件下生长。E407-8(T) 菌株的主要细胞脂肪酸为总和特征 3(C(16 : 1)ω7c 和/或 iso-C(15 : 0) 2-OH)、C(17 : 1)ω8c、C(16 : 0) 和 C(18 : 1)ω7c。主要呼吸醌为 ubiquinone Q-8。DNA G+C 含量为 51.0 mol%。基于多相分类学研究的结果,E407-8(T) 菌株代表 Rheinheimera 属的一个新种,因此提议将其命名为南海 Rheinheimera 纳海ensis 新种。该模式菌株为 E407-8(T)(= CCTCC AB 209089(T) = KACC 14030(T))。还提出了对 Rheinheimera Brettar 等人 2002 年修订的 Rheinheimera 属的描述的修订版。2007 年 Merchant 等人。

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