Shao Xuan, Peng Yun-Lin, Guo Jin-Hang, Chen Zhao-Tong, Zhong Hua-Ming, Meng Di, Hou Hong-Jian, Zhang Xi-Ying, Zhao Yong, Li Yi
Henan Provincial Engineering Research Center for Development and Application of Characteristic Microorganism Resources, Engineering Technology Research Center of Biomass Degradation and Gasification, Key Laboratory on Agricultural Microorganism Resources Development of Shangqiu, Shangqiu Normal University, Shangqiu, 476000, People's Republic of China.
College of Life Sciences, Shanxi Agricultural University, Taigu, 030801, People's Republic of China.
Curr Microbiol. 2025 Aug 3;82(9):429. doi: 10.1007/s00284-025-04417-5.
Three Gram-stain-negative, aerobic, rod-shaped bacterial strains, FR7-31, FR7-34 and HH7-4, were isolated from sediment samples of the Fenhe River basin, China. The 16S rRNA gene sequence analysis revealed that strain FR7-31 shares 99.7% and 99.4% similarities with strains FR7-34 and HH7-4, respectively. These three strains exhibited high sequence similarities to Rheinheimera nanhaiensis E407-8 (98.6-98.9%), Rheinheimera aquimaris SW-353 (98.4-98.6%), and Rheinheimera pleomorphica PKS7 (98.3-98.8%), and less than 98.0% similarity with other Rheinheimera type strains. Taxonomic placement based on phylogenetic analyses of 16S rRNA gene sequences and 1480 single-copy orthologous clusters, placed these strains within the genus Rheinheimera. Strain FR7-31 contained C and summed features 3 (Cω7c/Cω6c and/or iso-C 2-OH) as its major fatty acids. The predominant polar lipids included phosphatidylethanolamine, phosphatidylglycerol, one unidentified aminophospholipid and three unidentified lipids. The genome of strain FR7-31 was 3.63 Mb in length with 50.5% G + C content. Strain FR7-31 shared 98.1% average nucleotide identity (ANI) and 80.8-81.7% digital DNA-DNA hybridization (dDDH) values with strains FR7-34 and HH7-4, indicating they represent the same species. Additionally, ANI and dDDH values between strain FR7-31 and other Rheinheimera type strains with publicly available genomes were below 89.4% and 37.6%, respectively. Distinct phenotypic and genotypic characteristics differentiate strains FR7-31, FR7-34 or HH7-4 from other Rheinheimera species. Thus, type strain FR7-31 (= MCCC 1K07536 = KCTC 92239) along with strains FR7-34 (= MCCC 1K07537 = KCTC 92240) and HH7-4 (= MCCC 1K07538 = KCTC 92241) represent a novel Rheinheimera species, in which the name Rheinheimera fenheensis, is proposed.
从中国汾河流域的沉积物样本中分离出三株革兰氏阴性、需氧、杆状细菌菌株,FR7-31、FR7-34和HH7-4。16S rRNA基因序列分析表明,菌株FR7-31与菌株FR7-34和HH7-4的相似性分别为99.7%和99.4%。这三株菌株与南海莱茵海默氏菌E407-8(98.6-98.9%)、水生莱茵海默氏菌SW-353(98.4-98.6%)和多形莱茵海默氏菌PKS7(98.3-98.8%)表现出高度的序列相似性,与其他莱茵海默氏菌模式菌株的相似性低于98.0%。基于16S rRNA基因序列和1480个单拷贝直系同源簇的系统发育分析,将这些菌株归为莱茵海默氏菌属。菌株FR7-31以C和总和特征3(Cω7c/Cω6c和/或异-C 2-OH)作为其主要脂肪酸。主要的极性脂质包括磷脂酰乙醇胺、磷脂酰甘油、一种未鉴定的氨基磷脂和三种未鉴定的脂质。菌株FR7-31的基因组长度为3.63 Mb,G+C含量为50.5%。菌株FR7-31与菌株FR7-34和HH7-4的平均核苷酸同一性(ANI)为98.1%,数字DNA-DNA杂交(dDDH)值为80.8-81.7%,表明它们代表同一物种。此外,菌株FR7-31与其他具有公开可用基因组的莱茵海默氏菌模式菌株之间的ANI和dDDH值分别低于89.4%和37.6%。独特的表型和基因型特征使菌株FR7-31、FR7-34或HH7-4与其他莱茵海默氏菌物种区分开来。因此,模式菌株FR7-31(=MCCC 1K07536=KCTC 92239)与菌株FR7-34(=MCCC 1K07537=KCTC 92240)和HH7-4(=MCCC 1K07538=KCTC 92241)代表一个新的莱茵海默氏菌物种,为此提出“汾河莱茵海默氏菌”这一名称。