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基于细胞的异质细菌群体感应模型。

A cell-based model for quorum sensing in heterogeneous bacterial colonies.

机构信息

Computational Biology and Biological Physics, Department of Astronomy and Theoretical Physics, Lund University, Lund, Sweden.

出版信息

PLoS Comput Biol. 2010 Jun 17;6(6):e1000819. doi: 10.1371/journal.pcbi.1000819.

Abstract

Although bacteria are unicellular organisms, they have the ability to act in concert by synthesizing and detecting small diffusing autoinducer molecules. The phenomenon, known as quorum sensing, has mainly been proposed to serve as a means for cell-density measurement. Here, we use a cell-based model of growing bacterial microcolonies to investigate a quorum-sensing mechanism at a single cell level. We show that the model indeed predicts a density-dependent behavior, highly dependent on local cell-clustering and the geometry of the space where the colony is evolving. We analyze the molecular network with two positive feedback loops to find the multistability regions and show how the quorum-sensing mechanism depends on different model parameters. Specifically, we show that the switching capability of the network leads to more constraints on parameters in a natural environment where the bacteria themselves produce autoinducer than compared to situations where autoinducer is introduced externally. The cell-based model also allows us to investigate mixed populations, where non-producing cheater cells are shown to have a fitness advantage, but still cannot completely outcompete producer cells. Simulations, therefore, are able to predict the relative fitness of cheater cells from experiments and can also display and account for the paradoxical phenomenon seen in experiments; even though the cheater cells have a fitness advantage in each of the investigated groups, the overall effect is an increase in the fraction of producer cells. The cell-based type of model presented here together with high-resolution experiments will play an integral role in a more explicit and precise comparison of models and experiments, addressing quorum sensing at a cellular resolution.

摘要

尽管细菌是单细胞生物,但它们能够通过合成和检测小的扩散自动诱导分子来协同作用。这种现象被称为群体感应,主要被认为是一种用于测量细胞密度的方法。在这里,我们使用基于细胞的细菌微菌落生长模型,在单细胞水平上研究群体感应机制。我们表明,该模型确实预测了一种与密度相关的行为,这种行为高度依赖于局部细胞聚类和菌落进化的空间几何形状。我们用两个正反馈回路分析分子网络,找到多稳定性区域,并展示群体感应机制如何取决于不同的模型参数。具体来说,我们表明,与外部引入自动诱导物的情况相比,网络的切换能力导致在细菌自身产生自动诱导物的自然环境中对参数的限制更多。基于细胞的模型还允许我们研究混合种群,其中非产生性骗子细胞具有适应性优势,但仍不能完全淘汰产生性细胞。因此,模拟能够根据实验预测骗子细胞的相对适应性,并且还可以显示和解释实验中看到的矛盾现象;尽管骗子细胞在每个被调查的群体中都具有适应性优势,但总体效果是产生性细胞的比例增加。这里提出的基于细胞的模型类型以及高分辨率实验将在更明确和精确地比较模型和实验方面发挥重要作用,从而在细胞分辨率上解决群体感应问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4da0/2887461/a1603100cfd3/pcbi.1000819.g001.jpg

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