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谷氨酸及其金属配合物的溶剂化自由能:计算机模拟研究。

Solvation free energies of glutamate and its metal complexes: a computer simulation study.

机构信息

Department of Chemistry, East Tehran Branch Ghiamdasht, Islamic Azad University, Tehran, Iran.

出版信息

J Mol Model. 2011 Apr;17(4):889-98. doi: 10.1007/s00894-010-0776-7. Epub 2010 Jul 1.

Abstract

Most biological ion channels demonstrate a high degree of selectivity for one type of ion more than others, and in many cases, how they control attaining this is still not clear. So we have studied on some metal ion compounds of glutamate. The Glutamate and its meal ion compounds (Ca(2+), Na(+), K(+) and Li(+)) were first modeled by ab initio calculations and then Monte Carlo simulation was used to calculate solvation free energies and also the complexes free energies for the related structures. The results indicated that Glutamate-Ca(2+) have more stability in water than other metal ion. Also, it was found out that the more movement in ions; less stability of the structure would result. This trend can be seen both in gas and liquid phase.

摘要

大多数生物离子通道对一种离子的选择性远高于其他离子,而在许多情况下,它们如何控制这种选择性仍然不清楚。因此,我们研究了一些谷氨酸的金属离子化合物。首先通过从头算计算对谷氨酸及其金属离子化合物(Ca(2+)、Na(+)、K(+)和 Li(+))进行建模,然后使用蒙特卡罗模拟计算溶剂化自由能以及相关结构的配合物自由能。结果表明,谷氨酸-Ca(2+)在水中比其他金属离子更稳定。此外,还发现离子的活动性越大,结构的稳定性越低。这种趋势在气相和液相中都可以看到。

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