Department of Biological Sciences, Louisiana State University,Baton Rouge, LA 70803, USA.
Environ Microbiol. 2010 Jul;12(7):1855-67. doi: 10.1111/j.1462-2920.2010.02190.x. Epub 2010 Apr 9.
Relatively little is known about the distribution and diversity of CO-oxidizing bacteria during succession on volcanic deposits even though they are among the primary colonists. We surveyed CO-oxidizing communities across a vegetation gradient on a 1959 cinder deposit using coxL (large subunit gene of carbon monoxide dehydrogenase) sequences. Sequences most closely related to a coxL sequence from Ktedonobacter racemifer, dominated unvegetated cinders, while Proteobacteria-like sequences dominated vegetated sites. The number of coxL operational taxonomic units (OTUs) increased threefold with increased vegetation, and correlated most strongly with the increased beta-Proteobacteria richness (r = 0.987). These compositional shifts were also reflected in overall bacterial community compositions as determined by 16S rRNA gene analysis. Notably, coxL OTU:16S rRNA OTU ratios increased with increased vegetation, indicating that CO oxidizers became a larger fraction of total bacterial richness during succession. Results from most probable number estimates and maximum potential CO uptake activity assays indicate that increased richness is paralleled by increased CO oxidizer abundance, which likely results from increased vegetation and organic carbon content. Collectively, results suggest that in contrast to patterns observed for plant succession, a versatile bacterial functional group that is important during early colonization and succession can remain important in later stages of succession, irrespective of dramatic environmental changes.
尽管 CO 氧化菌是第一批定居者之一,但关于它们在火山沉积物演替过程中的分布和多样性,人们知之甚少。我们使用 coxL(一氧化碳脱氢酶大亚基基因)序列,对 1959 年火山渣沉积物上的植被梯度进行了 CO 氧化菌群落调查。与 Ktedonobacter racemifer 的 coxL 序列最密切相关的序列,主导着无植被的火山渣,而类似变形菌的序列则主导着有植被的地点。coxL 操作分类单元(OTU)的数量随着植被的增加增加了两倍,与β变形菌丰富度的增加呈最强相关(r = 0.987)。这些组成变化也反映在 16S rRNA 基因分析确定的整体细菌群落组成中。值得注意的是,coxL OTU:16S rRNA OTU 比率随着植被的增加而增加,表明 CO 氧化菌在演替过程中成为总细菌丰富度的更大组成部分。最可能数估计和最大潜在 CO 摄取活性测定的结果表明,丰富度的增加与 CO 氧化菌丰度的增加相平行,这可能是由于植被和有机碳含量的增加所致。总的来说,结果表明,与植物演替观察到的模式相反,在早期定居和演替过程中很重要的多功能细菌功能群,无论环境发生剧烈变化,都可以在演替的后期阶段保持重要地位。