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Direct observation of ultrafast folding and denatured state dynamics in single protein molecules.单个蛋白质分子中超快折叠和变性状态动力学的直接观察。
Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18569-74. doi: 10.1073/pnas.0910860106. Epub 2009 Oct 19.
2
Direct observation of barrier-limited folding of BBL by single-molecule fluorescence resonance energy transfer.通过单分子荧光共振能量转移直接观察BBL的屏障限制折叠。
Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16239-44. doi: 10.1073/pnas.0909126106. Epub 2009 Sep 11.
3
The folding mechanism of BBL: Plasticity of transition-state structure observed within an ultrafast folding protein family.BBL的折叠机制:在超快折叠蛋白家族中观察到的过渡态结构可塑性
J Mol Biol. 2009 Jul 31;390(5):1060-73. doi: 10.1016/j.jmb.2009.05.011. Epub 2009 May 13.
4
Downhill versus barrier-limited folding of BBL 3. Heterogeneity of the native state of the BBL peripheral subunit binding domain and its implications for folding mechanisms.BBL 3的下坡折叠与势垒限制折叠。BBL外周亚基结合结构域天然态的异质性及其对折叠机制的影响。
J Mol Biol. 2009 Apr 10;387(4):993-1001. doi: 10.1016/j.jmb.2009.02.014. Epub 2009 Feb 13.
5
Downhill versus barrier-limited folding of BBL 2: mechanistic insights from kinetics of folding monitored by independent tryptophan probes.BBL 2的下坡折叠与势垒限制折叠:来自独立色氨酸探针监测的折叠动力学的机制见解
J Mol Biol. 2009 Apr 10;387(4):975-85. doi: 10.1016/j.jmb.2008.12.056. Epub 2008 Dec 30.
6
Downhill versus barrier-limited folding of BBL 1: energetic and structural perturbation effects upon protonation of a histidine of unusually low pKa.
J Mol Biol. 2009 Apr 10;387(4):986-92. doi: 10.1016/j.jmb.2008.12.055. Epub 2008 Dec 30.
7
Conservation of transition state structure in fast folding peripheral subunit-binding domains.快速折叠的外周亚基结合结构域中过渡态结构的保守性。
J Mol Biol. 2008 Oct 31;383(1):224-37. doi: 10.1016/j.jmb.2008.06.081. Epub 2008 Jul 3.
8
The helix-turn-helix motif as an ultrafast independently folding domain: the pathway of folding of Engrailed homeodomain.作为超快速独立折叠结构域的螺旋-转角-螺旋基序:Engrailed 同源结构域的折叠途径。
Proc Natl Acad Sci U S A. 2007 May 29;104(22):9272-7. doi: 10.1073/pnas.0703434104. Epub 2007 May 18.
9
Probe-dependent and nonexponential relaxation kinetics: unreliable signatures of downhill protein folding.探针依赖的非指数弛豫动力学:蛋白质向下折叠的不可靠特征
Proteins. 2007 Jul 1;68(1):205-17. doi: 10.1002/prot.21342.
10
Distinguishing between cooperative and unimodal downhill protein folding.区分协同性和单峰性的蛋白质下坡折叠。
Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):123-7. doi: 10.1073/pnas.0609717104.

人外周亚基结合域在克服排斥库仑力的同时快速折叠。

The human peripheral subunit-binding domain folds rapidly while overcoming repulsive Coulomb forces.

机构信息

Medical Research Council Centre for Protein Engineering, Cambridge, United Kingdom.

出版信息

Protein Sci. 2010 Sep;19(9):1704-13. doi: 10.1002/pro.453.

DOI:10.1002/pro.453
PMID:20662005
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2975134/
Abstract

Peripheral subunit binding domains (PSBDs) are integral parts of large multienzyme complexes involved in carbohydrate metabolism. PSBDs facilitate shuttling of prosthetic groups between different catalytic subunits. Their protein surface is characterized by a high density of positive charges required for binding to subunits within the complex. Here, we investigated folding thermodynamics and kinetics of the human PSBD (HSBD) using circular dichroism and tryptophan fluorescence experiments. HSBD was only marginally stable under physiological solvent conditions but folded within microseconds via a barrier-limited apparent two-state transition, analogous to its bacterial homologues. The high positive surface-charge density of HSBD leads to repulsive Coulomb forces that modulate protein stability and folding kinetics, and appear to even induce native-state movement. The electrostatic strain was alleviated at high solution-ionic-strength by Debye-Hückel screening. Differences in ionic-strength dependent characteristics among PSBD homologues could be explained by differences in their surface charge distributions. The findings highlight the trade-off between protein function and stability during protein evolution.

摘要

外周亚基结合域 (PSBD) 是参与碳水化合物代谢的大型多酶复合物的组成部分。PSBD 促进辅基在不同催化亚基之间的穿梭。它们的蛋白质表面具有高密度的正电荷,用于与复合物内的亚基结合。在这里,我们使用圆二色性和色氨酸荧光实验研究了人 PSBD (HSBD) 的折叠热力学和动力学。在生理溶剂条件下,HSBD 仅略有稳定性,但通过屏障限制的明显两态转变在微秒内折叠,类似于其细菌同源物。HSBD 的高正表面电荷密度会产生排斥库仑力,从而调节蛋白质稳定性和折叠动力学,并且似乎甚至会诱导天然状态的运动。高溶液离子强度通过 Debye-Hückel 屏蔽减轻了静电应变。PSBD 同源物中与离子强度相关的特征的差异可以用它们的表面电荷分布的差异来解释。这些发现强调了蛋白质进化过程中蛋白质功能和稳定性之间的权衡。