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红外和电子顺磁共振光谱学表征乙酰辅酶 A 合酶反应中光解催化活性 Ni(I)-CO 中间产物形成的 Ni(I)物种。

Infrared and EPR spectroscopic characterization of a Ni(I) species formed by photolysis of a catalytically competent Ni(I)-CO intermediate in the acetyl-CoA synthase reaction.

机构信息

Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan 48109-0606, USA.

出版信息

Biochemistry. 2010 Sep 7;49(35):7516-23. doi: 10.1021/bi1010128.

Abstract

Acetyl-CoA synthase (ACS) catalyzes the synthesis of acetyl-CoA from CO, coenzyme A (CoA), and a methyl group from the CH(3)-Co(3+) site in the corrinoid iron-sulfur protein (CFeSP). These are the key steps in the Wood-Ljungdahl pathway of anaerobic CO and CO(2) fixation. The active site of ACS is the A-cluster, which is an unusual nickel-iron-sulfur cluster. There is significant evidence for the catalytic intermediacy of a CO-bound paramagnetic Ni species, with an electronic configuration of Fe(4)S(4)-(Ni(p)(+)-CO)-(Ni(d)(2+)), where Ni(p) and Ni(d) represent the Ni centers in the A-cluster that are proximal and distal to the Fe(4)S(4) cluster, respectively. This well-characterized Ni(p)(+)-CO intermediate is often called the NiFeC species. Photolysis of the Ni(p)(+)-CO state generates a novel Ni(p)(+) species (A(red)) with a rhombic electron paramagnetic resonance spectrum (g values of 2.56, 2.10, and 2.01) and an extremely low (1 kJ/mol) barrier for recombination with CO. We suggest that the photolytically generated A(red) species is (or is similar to) the Ni(p)(+) species that binds CO (to form the Ni(p)(+)-CO species) and the methyl group (to form Ni(p)-CH(3)) in the ACS catalytic mechanism. The results provide support for a binding site (an "alcove") for CO near Ni(p), indicated by X-ray crystallographic studies of the Xe-incubated enzyme. We propose that, during catalysis, a resting Ni(p)(2+) state predominates over the active Ni(p)(+) species (A(red)*) that is trapped by the coupling of a one-electron transfer step to the binding of CO, which pulls the equilibrium toward Ni(p)(+)-CO formation.

摘要

乙酰辅酶 A 合酶 (ACS) 催化从 CO、辅酶 A (CoA) 和钴胺素铁硫蛋白 (CFeSP) 的 CH(3)-Co(3+)位点的甲基基团合成乙酰辅酶 A。这些是厌氧 CO 和 CO(2)固定的 Wood-Ljungdahl 途径的关键步骤。ACS 的活性位点是 A 簇,它是一个不寻常的镍铁硫簇。有大量证据表明,在催化过程中存在一个 CO 结合的顺磁 Ni 物种,其电子构型为 Fe(4)S(4)-(Ni(p)(+)-CO)-(Ni(d)(2+)),其中 Ni(p) 和 Ni(d) 分别代表 A 簇中与 Fe(4)S(4)簇近和远的 Ni 中心。这种特征明显的 Ni(p)(+)-CO 中间产物通常称为 NiFeC 物种。Ni(p)(+)-CO 态的光解生成一种新型的 Ni(p)(+)物种 (A(red)*),具有菱形电子顺磁共振谱 (g 值为 2.56、2.10 和 2.01) 和与 CO 重新组合的极低 (1 kJ/mol) 能垒。我们认为,光解生成的 A(red)物种是 (或类似于) 在 ACS 催化机制中与 CO(形成 Ni(p)(+)-CO 物种)和甲基基团 (形成 Ni(p)-CH(3)) 结合的 Ni(p)(+)物种。结果为 X 射线晶体学研究 Xe 孵育酶时所表明的 Ni(p)附近 CO 的结合位点 (“凹室”)提供了支持。我们提出,在催化过程中,静止的 Ni(p)(2+)状态占主导地位,而活性的 Ni(p)(+)物种 (A(red))则被与 CO 结合的单电子转移步骤的偶联所捕获,这将平衡推向 Ni(p)(+)-CO 的形成。

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