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通过合成配体识别茎环 RNA 结构的策略:在 HIV-1 框架移位刺激序列中的应用。

Strategies for recognition of stem-loop RNA structures by synthetic ligands: application to the HIV-1 frameshift stimulatory sequence.

机构信息

Department of Dermatology, University of Rochester, Rochester, NY 14642, USA.

出版信息

J Med Chem. 2010 Aug 26;53(16):6018-27. doi: 10.1021/jm100231t.

DOI:10.1021/jm100231t
PMID:20672840
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2928052/
Abstract

Production of the Gag-Pol polyprotein in human immunodeficiency virus (HIV) requires a -1 ribosomal frameshift, which is directed by a highly conserved RNA stem-loop. Building on our discovery of a set of disulfide-containing peptides that bind this RNA, we describe medicinal chemistry efforts designed to begin to understand the structure-activity relationships and RNA sequence-selectivity relationships associated with these compounds. Additionally, we have prepared analogues incorporating an olefin or saturated hydrocarbon bioisostere of the disulfide moiety, as a first step toward enhancing biostability. The olefin-containing compounds exhibit affinity comparable to the lead disulfide and, importantly, have no discernible toxicity when incubated with human fibroblasts at concentrations up to 1 mM.

摘要

在人类免疫缺陷病毒 (HIV) 中,Gag-Pol 多聚蛋白的产生需要一个 -1 核糖体移码,该移码由一个高度保守的 RNA 茎环引导。基于我们发现的一组结合这种 RNA 的含二硫键的肽,我们描述了旨在开始理解与这些化合物相关的结构-活性关系和 RNA 序列选择性关系的药物化学研究。此外,我们还制备了含有二硫键部分的烯烃或饱和烃生物等排体的类似物,作为提高生物稳定性的第一步。含烯烃的化合物表现出与先导二硫化物相当的亲和力,重要的是,在高达 1mM 的浓度下与人成纤维细胞孵育时没有明显的毒性。

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