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一个酪氨酸-二锰偶联自旋系统是来自于 Corynebacterium ammoniagenes 的核糖核苷酸还原酶的 R2F 亚基的天然金属自由基辅因子。

A tyrosyl-dimanganese coupled spin system is the native metalloradical cofactor of the R2F subunit of the ribonucleotide reductase of Corynebacterium ammoniagenes.

机构信息

Max-Planck-Institut für Bioanorganische Chemie, Stiftstrasse 34-36, D-45470 Mülheim (Ruhr), Germany.

出版信息

J Am Chem Soc. 2010 Aug 18;132(32):11197-213. doi: 10.1021/ja1036995.

Abstract

The X-ray crystallographic structure of the native R2F subunit of the ribonucleotide reductase (RNR) of Corynebacterium ammoniagenes ATCC 6872 is reported, with a resolution of 1.36 A. The metal site contains an oxo/hydroxo-bridged manganese dimer, located near a tyrosine residue (Y115). The coordination of the manganese dimer and its distance to a nearby tyrosine residue resemble the di-iron metalloradical cofactor of class I RNR from Escherichia coli . Multifrequency EPR measurements of the highly active C. ammoniagenes R2F subunit show that the metal site contains a ferromagnetically exchange-coupled Mn(III)Mn(III) dimer weakly coupled to a tyrosyl radical. A mechanism for the metalloradical cofactor (Mn(III)Mn(III)Y(*)) generation is proposed. H(2)O(2) (HO(2)(-)) instead of O(2) is hypothesized as physiological oxidant for the Mn dimer which in turn oxidizes the tyrosine Y115. Changes in the ligand sphere of both manganese ions during metalloradical generation direct the complex formation of this cofactor, disfavoring alternate reaction pathways such as H(2)O(2) dismutation, as observed for manganese catalase, a structural analogue of the R2F metal site. The presented results demonstrate the importance of manganese for radical formation in this RNR and confirm the assignment of this enzyme to class Ib.

摘要

报道了来自于 Corynebacterium ammoniagenes ATCC 6872 的核酶(RNR)的天然 R2F 亚基的 X 射线晶体结构,分辨率为 1.36A。金属中心含有一个氧/羟桥联的锰二聚体,位于酪氨酸残基(Y115)附近。锰二聚体的配位及其与附近酪氨酸残基的距离类似于大肠杆菌 I 类 RNR 的双铁金属自由基辅因子。高活性 C. ammoniagenes R2F 亚基的多频 EPR 测量表明,金属中心含有一个铁磁交换耦合的 Mn(III)Mn(III)二聚体,与一个酪氨酰基自由基弱耦合。提出了一种金属自由基辅因子(Mn(III)Mn(III)Y(*))生成的机制。假设 H2O2(HO2(-))而不是 O2 是 Mn 二聚体的生理氧化剂,Mn 二聚体进而氧化酪氨酸 Y115。在金属自由基生成过程中两个锰离子配体的变化指导了这种辅因子的络合形成,不利于替代反应途径,如 H2O2 的歧化,这在结构类似物锰过氧化物酶中观察到。所呈现的结果证明了锰在该 RNR 中自由基形成中的重要性,并证实了该酶属于 Ib 类的归属。

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