Kramer Marcel, Boeck Janne, Reichenbach Daniela, Kaether Christoph, Schreiber Stefan, Platzer Matthias, Rosenstiel Philip, Huse Klaus
Genome Analysis, Leibniz Institute for Age Research - Fritz Lipmann Institute, Beutenbergstrasse 11, 07745 Jena, Germany.
BMC Res Notes. 2010 Aug 10;3:224. doi: 10.1186/1756-0500-3-224.
The innate immune system employs several receptor families that form the basis of sensing pathogen-associated molecular patterns. NOD (nucleotide-binding and oligomerization domain) like receptors (NLRs) comprise a group of cytosolic proteins that trigger protective responses upon recognition of intracellular danger signals. NOD2 displays a tandem caspase recruitment domain (CARD) architecture, which is unique within the NLR family.
Here, we report a novel alternative transcript of the NOD2 gene, which codes for a truncated tandem CARD only protein, called NOD2-C2. The transcript isoform is highest expressed in leucocytes, a natural barrier against pathogen invasion, and is strictly linked to promoter usage as well as predominantly to one allele of the single nucleotide polymorphism rs2067085. Contrary to a previously identified truncated single CARD NOD2 isoform, NOD2-S, NOD2-C2 is able to activate NF-kappaB in a dose dependent manner independently of muramyl dipeptide (MDP). On the other hand NOD2-C2 competes with MDPs ability to activate the NOD2-driven NF-kappaB signaling cascade.
NOD2 transcripts having included an alternative exon downstream of exon 3 (exon 3a) are the endogenous equivalents of a previously described in vitro construct with the putative protein composed of only the two N-terminal CARDs. This protein form (NOD2-C2) activates NF-kappaB independent of an MDP stimulus and is a potential regulator of NOD2 signaling.
天然免疫系统利用多个受体家族作为识别病原体相关分子模式的基础。NOD(核苷酸结合寡聚化结构域)样受体(NLRs)是一组胞质蛋白,在识别细胞内危险信号后触发保护性反应。NOD2具有串联半胱天冬酶募集结构域(CARD),这在NLR家族中是独特的。
在此,我们报告了NOD2基因的一种新的可变转录本,其编码一种仅含截短串联CARD的蛋白,称为NOD2-C2。该转录本异构体在白细胞(病原体入侵的天然屏障)中表达最高,并且与启动子使用密切相关,主要与单核苷酸多态性rs2067085的一个等位基因相关。与先前鉴定的截短单CARD NOD2异构体NOD2-S不同,NOD2-C2能够以剂量依赖方式独立于胞壁酰二肽(MDP)激活NF-κB。另一方面,NOD2-C2与MDP激活由NOD2驱动的NF-κB信号级联反应的能力相互竞争。
包含外显子3下游(外显子3a)可变外显子的NOD2转录本是先前描述的体外构建体的内源性等效物,其推定蛋白仅由两个N端CARD组成。这种蛋白形式(NOD2-C2)独立于MDP刺激激活NF-κB,是NOD2信号传导的潜在调节因子。