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破坏大肠杆菌二氢二羧酸合成酶(DHDPS)的四级结构会产生一种功能性单体,该单体不再受赖氨酸抑制。

Disruption of quaternary structure in Escherichia coli dihydrodipicolinate synthase (DHDPS) generates a functional monomer that is no longer inhibited by lysine.

机构信息

Biomolecular Interaction Centre, University of Canterbury, Christchurch, New Zealand.

出版信息

Arch Biochem Biophys. 2010 Nov 15;503(2):202-6. doi: 10.1016/j.abb.2010.08.009. Epub 2010 Aug 13.

DOI:10.1016/j.abb.2010.08.009
PMID:20709017
Abstract

Escherichia coli dihydrodipicolinate synthase (DHDPS, E.C. 4.2.1.52), a natively homotetrameric enzyme was converted to a monomeric species through the introduction of destabilising interactions at two different subunit interfaces allowing exploration of the roles of the quaternary structure in affecting catalytic competency. The double mutant DHDPS-L197D/Y107W displays gel filtration characteristics consistent with a single non-interacting monomeric species, which was confirmed by sedimentary velocity experiments. This monomer was shown to be catalytically active, but with reduced catalytic efficiency (k(cat)=9.8±0.5s(-1)), displaying 8% of the specific activity of the wild-type enzyme. The Michaelis constants for the substrates pyruvate and for (S)-aspartate semialdehyde increased by an order of magnitude, indicating that quaternary structure plays a significant role in substrate specificity. This monomeric species exhibited an enhanced propensity for aggregation and inactivation, indicating that whilst the oligomerization is not an intrinsic criterion for catalysis, higher oligomeric forms may benefit from both increased catalytic efficiency and diminished aggregation propensity. Furthermore, allosteric inhibition by (S)-lysine was abolished for DHDPS-L197D/Y107W, confirming the importance of the dimeric unit as the minimal functional assembly for efficient (S)-lysine binding.

摘要

大肠杆菌二氢二吡咯二羧酸合酶(DHDPS,E.C. 4.2.1.52)是一种天然的同源四聚体酶,通过在两个不同的亚基界面引入不稳定相互作用,将其转化为单体,从而可以探索四级结构对影响催化能力的作用。双突变体 DHDPS-L197D/Y107W 显示出与单个非相互作用单体一致的凝胶过滤特征,这通过沉降速度实验得到了证实。该单体显示出催化活性,但催化效率降低(kcat=9.8±0.5s-1),仅显示野生型酶的 8%的比活性。对于底物丙酮酸和(S)-天门冬氨酸半醛的米氏常数增加了一个数量级,表明四级结构在底物特异性中起着重要作用。这种单体形式表现出增强的聚集和失活倾向,表明虽然聚合不是催化的内在标准,但更高的聚合形式可能受益于提高的催化效率和降低的聚集倾向。此外,(S)-赖氨酸对 DHDPS-L197D/Y107W 的别构抑制作用被消除,证实了二聚体单元作为高效(S)-赖氨酸结合的最小功能组装体的重要性。

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Disruption of quaternary structure in Escherichia coli dihydrodipicolinate synthase (DHDPS) generates a functional monomer that is no longer inhibited by lysine.破坏大肠杆菌二氢二羧酸合成酶(DHDPS)的四级结构会产生一种功能性单体,该单体不再受赖氨酸抑制。
Arch Biochem Biophys. 2010 Nov 15;503(2):202-6. doi: 10.1016/j.abb.2010.08.009. Epub 2010 Aug 13.
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Specificity versus catalytic potency: The role of threonine 44 in Escherichia coli dihydrodipicolinate synthase mediated catalysis.特异性与催化效力:苏氨酸44在大肠杆菌二氢二吡啶二羧酸合酶介导的催化作用中的作用。
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Role of arginine 138 in the catalysis and regulation of Escherichia coli dihydrodipicolinate synthase.精氨酸138在大肠杆菌二氢二吡啶甲酸合酶催化及调节中的作用
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The crystal structure of three site-directed mutants of Escherichia coli dihydrodipicolinate synthase: further evidence for a catalytic triad.大肠杆菌二氢二吡啶甲酸合酶三个定点突变体的晶体结构:催化三联体的进一步证据
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The crystal structures of native and (S)-lysine-bound dihydrodipicolinate synthase from Escherichia coli with improved resolution show new features of biological significance.来自大肠杆菌的天然及与(S)-赖氨酸结合的二氢二吡啶甲酸合酶的晶体结构,分辨率得到提高,展现出具有生物学意义的新特征。
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Dihydrodipicolinate synthase (DHDPS) from Escherichia coli displays partial mixed inhibition with respect to its first substrate, pyruvate.来自大肠杆菌的二氢二吡啶甲酸合酶(DHDPS)对其第一种底物丙酮酸表现出部分混合型抑制作用。
Biochimie. 2004 Apr-May;86(4-5):311-5. doi: 10.1016/j.biochi.2004.03.008.

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