Chen Jun, Li Qi, Kong Ling-Feng, Zheng Xiao-Dong, Yu Rui-Hai
Fisheries College, Ocean University of China, Qingdao 266003, China.
Dongwuxue Yanjiu. 2010 Aug;31(4):345-52. doi: 10.3724/SP.J.1141.2010.04345.
DNA barcoding has exhibited charming effectiveness in species diagnosis, but some studies suggested the proportion of taxa that cannot be barcode-distinguished was still high. In the present study, the efficiency of the DNA barcoding for delimiting species of subfamily Tapetinae along the coast of China was tested. Fifty one original COI sequences of 11 species in five genera were analyzed. Among these sequences, 43 haplotypes were identified. Saturation plots generated for DNA barcode revealed that transitions became saturated after 10% to 15% sequence divergence. However, transversions were not saturated. Excluding Ruditapes variegata haplotype Hap33 that might be the result of a hybridization event, our finding showed that K2P-distances between conspecific sequences varied from 0% to 2.02% (0.46% on average), distances between congeneric sequences were from 17.21% to 32.24% (24.96% on average), and all conspecifics clustered together in the phylogentic trees. The proportion of individuals that can be distinguished by DNA barcoding was approximately 98% among 51 individuals analyzed in this study. Thus, the results evidenced that subfamily Tapetinae species can be efficiently identified through the use of DNA barcoding.
DNA条形码技术在物种鉴定方面已展现出令人瞩目的成效,但一些研究表明,无法通过条形码区分的分类单元比例仍然很高。在本研究中,对中国沿海地区花蛤亚科物种进行DNA条形码鉴定的效率进行了测试。分析了五个属11个物种的51条原始细胞色素氧化酶亚基I(COI)序列。在这些序列中,鉴定出43个单倍型。DNA条形码生成的饱和度图显示,转换在序列分歧达到10%至15%后趋于饱和。然而,颠换并未饱和。排除可能是杂交事件结果的杂色蛤单倍型Hap33后,我们的研究结果表明,同种序列之间的K2P距离在0%至2.02%之间(平均为0.46%),同属序列之间的距离在17.21%至32.24%之间(平均为24.96%),并且所有同种个体在系统发育树中聚在一起。在本研究分析的51个个体中,通过DNA条形码能够区分的个体比例约为98%。因此,结果证明花蛤亚科物种可通过使用DNA条形码技术进行有效鉴定。