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基于 COI 基因对中国沿海头足纲动物的 DNA 条形码分析。

DNA barcoding of Caenogastropoda along coast of China based on the COI gene.

机构信息

Key Laboratory of Mariculture Ministry of Education, Ocean University of China, Qingdao 266003, China.

出版信息

Mol Ecol Resour. 2012 Mar;12(2):209-18. doi: 10.1111/j.1755-0998.2011.03085.x. Epub 2011 Oct 31.

Abstract

DNA barcoding provides an efficient method for species-level identifications. In this study, we have amplified partial sequences of mitochondrial cytochrome c oxidase I (COI) gene from 110 specimens of 45 species of Caenogastropoda collected from the coast along China to evaluate whether DNA barcodes can distinguish these species accurately. The average Kimura 2-parameter (K2P) distances within species, genera and families were 0.44%, 13.96% and 22.27%, respectively. Both the neighbour-joining tree and the Bayesian tree showed a clear discrimination of all the species in our study with highly supported clades. These results proved that the species of Caenogastropoda can be efficiently and accurately identified by DNA barcoding based on the COI gene.

摘要

DNA 条形码为物种水平鉴定提供了一种有效的方法。在这项研究中,我们从中国沿海采集的 45 种 110 个 Caenogastropoda 标本中扩增了线粒体细胞色素 c 氧化酶 I(COI)基因的部分序列,以评估 DNA 条形码是否可以准确地区分这些物种。种内、属内和科内的平均 Kimura 2-参数(K2P)距离分别为 0.44%、13.96%和 22.27%。基于 COI 基因的邻接法和贝叶斯树都清晰地区分了我们研究中的所有物种,具有高度支持的分支。这些结果证明,基于 COI 基因的 DNA 条形码可以有效地、准确地鉴定腹足纲物种。

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