• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

癌症研究中甲基化检测的特异性:引物和探针设计指南

Specificity of methylation assays in cancer research: a guideline for designing primers and probes.

作者信息

Barekati Zeinab, Radpour Ramin, Kohler Corina, Zhong Xiao Yan

机构信息

Laboratory for Gynecological Oncology, Women's Hospital and Department of Biomedicine, University of Basel, Basel 4031, Switzerland.

出版信息

Obstet Gynecol Int. 2010;2010. doi: 10.1155/2010/870865. Epub 2010 Jul 27.

DOI:10.1155/2010/870865
PMID:20798774
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2926695/
Abstract

DNA methylation is an epigenetic regulation mechanism of genomic function, and aberrant methylation pattern has been found to be a common event in many diseases and human cancers. A large number of cancer studies have been focused on identification of methylation changes as biomarkers (i.e., breast cancer). However, still clinical use of them is very limited because of lack of specificity and sensitivity for diagnostic test. This highlights the critical need for specific primer and probe design to avoid false-positive detection of methylation profiling. The guideline and online web tools that are introduced in this paper might help to perform a successful experiment and to develop specific diagnosis biomarkers by designing right primer pair and probe prior to experimental step.

摘要

DNA甲基化是一种基因组功能的表观遗传调控机制,并且已发现异常的甲基化模式在许多疾病和人类癌症中是常见现象。大量癌症研究聚焦于将甲基化变化鉴定为生物标志物(例如乳腺癌)。然而,由于诊断测试缺乏特异性和敏感性,它们在临床中的应用仍然非常有限。这凸显了对特异性引物和探针设计的迫切需求,以避免甲基化谱的假阳性检测。本文介绍的指南和在线网络工具可能有助于在实验步骤之前通过设计正确的引物对和探针来成功进行实验并开发特异性诊断生物标志物。

相似文献

1
Specificity of methylation assays in cancer research: a guideline for designing primers and probes.癌症研究中甲基化检测的特异性:引物和探针设计指南
Obstet Gynecol Int. 2010;2010. doi: 10.1155/2010/870865. Epub 2010 Jul 27.
2
MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics.MSP-HTPrimer:一种用于改进表观遗传学中DNA甲基化分析实验设计的高通量引物设计工具。
Clin Epigenetics. 2016 Sep 21;8:101. doi: 10.1186/s13148-016-0269-3. eCollection 2016.
3
Early Epigenetic Markers for Precision Medicine.精准医学的早期表观遗传标志物。
Methods Mol Biol. 2018;1856:3-17. doi: 10.1007/978-1-4939-8751-1_1.
4
Designing PCR primer for DNA methylation mapping.设计用于DNA甲基化图谱分析的PCR引物。
Methods Mol Biol. 2007;402:371-84. doi: 10.1007/978-1-59745-528-2_19.
5
Optimal primer design using the novel primer design program: MSPprimer provides accurate methylation analysis of the ATM promoter.使用新型引物设计程序MSPprimer进行最佳引物设计,可对ATM启动子进行准确的甲基化分析。
Oncogene. 2007 Sep 13;26(42):6229-37. doi: 10.1038/sj.onc.1210433. Epub 2007 Mar 26.
6
methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.methBLAST和methPrimerDB:基于PCR的甲基化分析网络工具。
BMC Bioinformatics. 2006 Nov 9;7:496. doi: 10.1186/1471-2105-7-496.
7
MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research.MSRE-HTPrimer:一种针对表观遗传学研究优化的高通量全基因组引物设计流程。
Clin Epigenetics. 2016 Mar 5;8:26. doi: 10.1186/s13148-016-0190-9. eCollection 2016.
8
MethPrimer: designing primers for methylation PCRs.MethPrimer:用于甲基化PCR的引物设计
Bioinformatics. 2002 Nov;18(11):1427-31. doi: 10.1093/bioinformatics/18.11.1427.
9
Chemical Tools with Fluorescence Switches for Verifying Epigenetic Modifications.用于验证表观遗传修饰的荧光开关化学工具。
Acc Chem Res. 2019 Oct 15;52(10):2849-2857. doi: 10.1021/acs.accounts.9b00349. Epub 2019 Oct 2.
10
Detection of aberrant promoter methylation of GSTP1, RASSF1A, and RARβ2 in serum DNA of patients with breast cancer by a newly established one-step methylation-specific PCR assay.应用一种新建立的一步法甲基化特异性 PCR 检测技术检测乳腺癌患者血清 DNA 中 GSTP1、RASSF1A 和 RARβ2 的异常启动子甲基化。
Breast Cancer Res Treat. 2012 Feb;132(1):165-73. doi: 10.1007/s10549-011-1575-2. Epub 2011 May 19.

引用本文的文献

1
Plasma-Based Longitudinal Evaluation of Epigenetic Status in Hormone Receptor-Positive HER2-Negative Metastatic Breast Cancer.基于血浆的激素受体阳性、HER2阴性转移性乳腺癌表观遗传状态的纵向评估
Front Oncol. 2020 Sep 18;10:550185. doi: 10.3389/fonc.2020.550185. eCollection 2020.
2
Study of promoter methylation pattern of 14-3-3 sigma gene in normal and cancerous tissue of breast: A potential biomarker for detection of breast cancer in patients.乳腺正常组织与癌组织中14-3-3西格玛基因启动子甲基化模式的研究:一种检测乳腺癌患者的潜在生物标志物
Adv Biomed Res. 2012;1:80. doi: 10.4103/2277-9175.102990. Epub 2012 Oct 31.
3

本文引用的文献

1
Methylation profile of TP53 regulatory pathway and mtDNA alterations in breast cancer patients lacking TP53 mutations.乳腺癌患者中 TP53 调控通路甲基化谱和 mtDNA 改变与 TP53 基因突变缺失的关系。
Hum Mol Genet. 2010 Aug 1;19(15):2936-46. doi: 10.1093/hmg/ddq199. Epub 2010 May 12.
2
Correlation of telomere length shortening with promoter methylation profile of p16/Rb and p53/p21 pathways in breast cancer.端粒缩短与乳腺癌中 p16/Rb 和 p53/p21 通路启动子甲基化谱的相关性。
Mod Pathol. 2010 May;23(5):763-72. doi: 10.1038/modpathol.2009.195. Epub 2010 Jan 15.
3
New trends in molecular biomarker discovery for breast cancer.
Development of a multiplex methylation-specific PCR as candidate triage test for women with an HPV-positive cervical scrape.
开发一种多重 HPV 阳性宫颈刮片女性用甲基化特异性 PCR 作为候选分诊试验。
BMC Cancer. 2012 Nov 23;12:551. doi: 10.1186/1471-2407-12-551.
乳腺癌分子生物标志物发现的新趋势
Genet Test Mol Biomarkers. 2009 Oct;13(5):565-71. doi: 10.1089/gtmb.2009.0060.
4
PCR-based methods for detecting single-locus DNA methylation biomarkers in cancer diagnostics, prognostics, and response to treatment.基于聚合酶链反应的方法,用于在癌症诊断、预后评估及治疗反应中检测单基因座DNA甲基化生物标志物。
Clin Chem. 2009 Aug;55(8):1471-83. doi: 10.1373/clinchem.2008.121962. Epub 2009 Jun 11.
5
Methylation profiles of 22 candidate genes in breast cancer using high-throughput MALDI-TOF mass array.利用高通量基质辅助激光解吸电离飞行时间质谱技术分析乳腺癌中22个候选基因的甲基化图谱。
Oncogene. 2009 Aug 20;28(33):2969-78. doi: 10.1038/onc.2009.149. Epub 2009 Jun 8.
6
Methylation of protocadherin 10, a novel tumor suppressor, is associated with poor prognosis in patients with gastric cancer.原钙黏蛋白10是一种新型肿瘤抑制因子,其甲基化与胃癌患者的不良预后相关。
Gastroenterology. 2009 Feb;136(2):640-51.e1. doi: 10.1053/j.gastro.2008.10.050. Epub 2008 Oct 29.
7
Rapid analysis of heterogeneously methylated DNA using digital methylation-sensitive high resolution melting: application to the CDKN2B (p15) gene.使用数字甲基化敏感高分辨率熔解技术快速分析异甲基化 DNA:在 CDKN2B(p15) 基因中的应用。
Epigenetics Chromatin. 2008 Nov 3;1(1):7. doi: 10.1186/1756-8935-1-7.
8
High-throughput hacking of the methylation patterns in breast cancer by in vitro transcription and thymidine-specific cleavage mass array on MALDI-TOF silico-chip.通过体外转录和基于基质辅助激光解吸电离飞行时间质谱硅芯片的胸苷特异性切割质谱阵列对乳腺癌甲基化模式进行高通量破解。
Mol Cancer Res. 2008 Nov;6(11):1702-9. doi: 10.1158/1541-7786.MCR-08-0262.
9
Mass spectrometric analysis of cytosine methylation by base-specific cleavage and primer extension methods.通过碱基特异性切割和引物延伸方法对胞嘧啶甲基化进行质谱分析。
Methods Mol Biol. 2009;507:207-27. doi: 10.1007/978-1-59745-522-0_16.
10
Sensitive Melting Analysis after Real Time- Methylation Specific PCR (SMART-MSP): high-throughput and probe-free quantitative DNA methylation detection.实时甲基化特异性PCR后的灵敏熔解分析(SMART-MSP):高通量且无探针的定量DNA甲基化检测
Nucleic Acids Res. 2008 Apr;36(7):e42. doi: 10.1093/nar/gkn113. Epub 2008 Mar 15.