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通过分子积分方程理论与结构描述符相结合,准确预测水合自由能。

An accurate prediction of hydration free energies by combination of molecular integral equations theory with structural descriptors.

机构信息

The Max Planck Institute for Mathematics in the Sciences, Inselstrasse 22, Leipzig, 04103, Germany.

出版信息

J Phys Chem B. 2010 Sep 23;114(37):12068-79. doi: 10.1021/jp103955r.

Abstract

In this work, we report a novel method for the estimation of the hydration free energy of organic molecules, the structural descriptors correction (SDC) model. The method is based on a combination of the reference interaction site model (RISM) with several empirical corrections. The model requires only a small number of chemical descriptors associated with the main features of the chemical structure of solutes: excluded volume, branch, double bond, benzene ring, hydroxyl group, halogen atom, aldehyde group, ketone group, ether group, and phenol fragment. The optimum model was selected after testing of different RISM free energy expressions on a training set of 65 molecules. We show that the correction parameters of the SDC model are transferable between different chemical classes, which allows one to cover a wide range of organic solutes. The new model substantially increases the accuracy of calculated HFEs by RISM giving the standard deviation of the error for a test set of 120 organic molecules around 1.2 kcal/mol.

摘要

在这项工作中,我们报告了一种新的方法来估计有机分子的水合自由能,即结构描述符修正(SDC)模型。该方法基于参考相互作用位点模型(RISM)与几种经验修正的结合。该模型仅需要与溶质化学结构的主要特征相关的少量化学描述符:排除体积、支链、双键、苯环、羟基、卤素原子、醛基、酮基、醚基和酚片段。在对 65 个分子的训练集进行了不同 RISM 自由能表达式的测试后,选择了最佳模型。我们表明,SDC 模型的校正参数在不同的化学类别之间是可转移的,这允许覆盖广泛的有机溶质。新模型通过 RISM 大大提高了计算 HFEs 的准确性,使得 120 个有机分子测试集的误差标准偏差约为 1.2 kcal/mol。

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