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本文引用的文献

1
Next generation tools for high-throughput promoter and expression analysis employing single-copy knock-ins at the Hprt1 locus.利用Hprt1基因座单拷贝敲入进行高通量启动子和表达分析的新一代工具。
Genomics. 2009 Mar;93(3):196-204. doi: 10.1016/j.ygeno.2008.09.014. Epub 2008 Dec 3.
2
Identification of a set of genes showing regionally enriched expression in the mouse brain.一组在小鼠大脑中呈现区域富集表达的基因的鉴定。
BMC Neurosci. 2008 Jul 14;9:66. doi: 10.1186/1471-2202-9-66.
3
Creation of engineered human embryonic stem cell lines using phiC31 integrase.使用φC31整合酶创建工程化人类胚胎干细胞系。
Stem Cells. 2008 Jan;26(1):119-26. doi: 10.1634/stemcells.2007-0283. Epub 2007 Oct 25.
4
PAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation.PAZAR:一个用于收集和传播顺式调控序列注释的框架。
Genome Biol. 2007;8(10):R207. doi: 10.1186/gb-2007-8-10-r207.
5
A muscle-specific promoter directs Pitx3 gene expression in skeletal muscle cells.肌肉特异性启动子指导Pitx3基因在骨骼肌细胞中的表达。
J Biol Chem. 2007 Nov 9;282(45):33192-200. doi: 10.1074/jbc.M706119200. Epub 2007 Sep 11.
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Conservation of regional gene expression in mouse and human brain.小鼠和人类大脑中区域基因表达的保守性。
PLoS Genet. 2007 Apr 20;3(4):e59. doi: 10.1371/journal.pgen.0030059.
7
Genome-wide atlas of gene expression in the adult mouse brain.成年小鼠大脑基因表达的全基因组图谱。
Nature. 2007 Jan 11;445(7124):168-76. doi: 10.1038/nature05453. Epub 2006 Dec 6.
8
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system.BGEM:一个关于胚胎期和成年期小鼠神经系统基因表达的原位杂交数据库。
PLoS Biol. 2006 Apr;4(4):e86. doi: 10.1371/journal.pbio.0040086. Epub 2006 Mar 28.
9
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.脊椎动物、昆虫、蠕虫和酵母基因组中的进化保守元件。
Genome Res. 2005 Aug;15(8):1034-50. doi: 10.1101/gr.3715005. Epub 2005 Jul 15.
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Evolution at two levels: on genes and form.两个层面的进化:基因层面与形态层面。
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一种调控性的 MiniPromoter 工具盒,用于在大脑中驱动选择性表达。

A regulatory toolbox of MiniPromoters to drive selective expression in the brain.

机构信息

Centre for Molecular Medicine and Therapeutics at the Child and Family Research Institute, University of British Columbia, Vancouver, BC, Canada V5Z4H4.

出版信息

Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16589-94. doi: 10.1073/pnas.1009158107. Epub 2010 Aug 31.

DOI:10.1073/pnas.1009158107
PMID:20807748
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2944712/
Abstract

The Pleiades Promoter Project integrates genomewide bioinformatics with large-scale knockin mouse production and histological examination of expression patterns to develop MiniPromoters and related tools designed to study and treat the brain by directed gene expression. Genes with brain expression patterns of interest are subjected to bioinformatic analysis to delineate candidate regulatory regions, which are then incorporated into a panel of compact human MiniPromoters to drive expression to brain regions and cell types of interest. Using single-copy, homologous-recombination "knockins" in embryonic stem cells, each MiniPromoter reporter is integrated immediately 5' of the Hprt locus in the mouse genome. MiniPromoter expression profiles are characterized in differentiation assays of the transgenic cells or in mouse brains following transgenic mouse production. Histological examination of adult brains, eyes, and spinal cords for reporter gene activity is coupled to costaining with cell-type-specific markers to define expression. The publicly available Pleiades MiniPromoter Project is a key resource to facilitate research on brain development and therapies.

摘要

昴宿星启动子项目将全基因组生物信息学与大规模基因敲入小鼠生产和组织学表达模式检查相结合,开发出小型启动子和相关工具,旨在通过定向基因表达来研究和治疗大脑。具有大脑表达模式的基因进行生物信息学分析,以描绘候选调控区域,然后将这些区域整合到一组紧凑的人类小型启动子中,以驱动对感兴趣的脑区和细胞类型的表达。使用胚胎干细胞中的单拷贝、同源重组“基因敲入”,每个小型启动子报告基因都立即整合到小鼠基因组中 Hprt 基因座的 5'端。在转基因细胞的分化实验或转基因小鼠产生后的小鼠大脑中,对小型启动子表达谱进行特征分析。报告基因活性的成年大脑、眼睛和脊髓的组织学检查与细胞类型特异性标志物的共染色相结合,以定义表达。公开可用的昴宿星小型启动子项目是促进大脑发育和治疗研究的关键资源。