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建立一种环介导等温扩增检测方法,用于快速灵敏地检测牡蛎疱疹病毒 1 DNA。

Development of a loop-mediated isothermal amplification assay for rapid and sensitive detection of ostreid herpesvirus 1 DNA.

机构信息

Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Science, 106 Nanjing Road, Qingdao, Shandong, China.

出版信息

J Virol Methods. 2010 Dec;170(1-2):30-6. doi: 10.1016/j.jviromet.2010.08.015. Epub 2010 Sep 8.

Abstract

A loop-mediated isothermal amplification (LAMP) assay was developed for rapid, specific and sensitive detection of ostreid herpesvirus 1 (OsHV-1) DNA. A set of four primers was designed, based on the sequence of the ATPase subunit of the OsHV-1 DNA-packaging terminase gene. The reaction temperature and time were optimized to 64°C and 60min, respectively. LAMP products were detected by agarose gel electrophoresis or by visual inspection of a color change due to addition of fluorescent dye. The developed method was highly specific for detection of OsHV-1, and no cross-reaction was observed with other DNA viruses, such as White spot syndrome virus (WSSV), Penaeus stylirostris densovirus (PstDNV), Turbot reddish body iridovirus (TRBIV) and Lymphocystis disease virus (LCDV) found commonly in China. The lower detection limit of the LAMP assay was approximately 20 copies per reaction, and it was 100 times more sensitive than that of conventional PCR. A comparative evaluation of 10 oyster samples using LAMP and PCR assays showed overall correlation in positive and negative results for OsHV-1. These results indicate that the LAMP assay is a simple, rapid, sensitive, specific and reliable technique for the detection of OsHV-1. The LAMP technique has capacity for use for the detection of OsHV-1 both in the laboratory and on farms.

摘要

环介导等温扩增(LAMP)检测法被开发用于快速、特异性和灵敏地检测牡蛎疱疹病毒 1(OsHV-1)DNA。基于 OsHV-1 DNA 包装终止酶基因的 ATPase 亚基序列,设计了一组四个引物。反应温度和时间分别优化至 64°C 和 60min。通过琼脂糖凝胶电泳或通过添加荧光染料观察颜色变化来检测 LAMP 产物。所开发的方法对 OsHV-1 的检测具有高度特异性,与在中国常见的其他 DNA 病毒,如白斑综合征病毒(WSSV)、锯缘青蟹细小 DNA 病毒(PstDNV)、大菱鲆虹彩病毒(TRBIV)和淋巴囊肿病病毒(LCDV),没有交叉反应。LAMP 检测的最低检测限约为 20 个拷贝/反应,比常规 PCR 灵敏 100 倍。使用 LAMP 和 PCR 检测法对 10 个牡蛎样本的比较评估表明,两种方法对 OsHV-1 的阳性和阴性结果总体上具有相关性。这些结果表明,LAMP 检测法是一种简单、快速、灵敏、特异性和可靠的检测 OsHV-1 的技术。LAMP 技术具有在实验室和养殖场检测 OsHV-1 的能力。

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