Zhang Qingli, Shi Chenyin, Huang Jie, Jia Kuntong, Chen Xinhua, Liu Hong
Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, China.
J Virol Methods. 2009 Jun;158(1-2):18-23. doi: 10.1016/j.jviromet.2009.01.008. Epub 2009 Jan 31.
Turbot reddish body iridovirus (TRBIV) is a new piscine iridovirus that infects the turbot, Scophthalmus maximus, cultured in northern China and can cause high mortality. In this study, a loop-mediated isothermal amplification (LAMP) method was developed for the specific detection of this virus using primers designed from an Msp I restriction DNA fragment of the TRBIV genome. Mg(2+) concentrations, the reaction temperature, and the reaction time of LAMP were optimized to 6mM, 65 degrees C, and 60 min, respectively. The detection limit of the LAMP method was as low as seven copies and was 100 times more sensitive than the conventional PCR technique. Visual inspection of LAMP amplifications demonstrated that the positive and negative reactions exhibit distinct and different colors in daylight, which means that gel electrophoresis is not necessary to judge the presence or absence of the virus. LAMP can be conducted in 1h and requires only a simple heating device for incubation. Thus, the LAMP-TRBIV detection protocol has great potential for use in the detection of TRBIV in both the laboratory and the farm.
大菱鲆红体虹彩病毒(TRBIV)是一种新型鱼类虹彩病毒,可感染在中国北方养殖的大菱鲆(Scophthalmus maximus),并可导致高死亡率。在本研究中,利用从TRBIV基因组的Msp I限制性DNA片段设计的引物,开发了一种环介导等温扩增(LAMP)方法用于该病毒的特异性检测。LAMP的Mg(2+)浓度、反应温度和反应时间分别优化为6mM、65℃和60分钟。LAMP方法的检测限低至7个拷贝,比传统PCR技术灵敏100倍。对LAMP扩增产物的目视检查表明,阳性和阴性反应在日光下呈现出明显不同的颜色,这意味着无需进行凝胶电泳来判断病毒的存在与否。LAMP检测可在1小时内完成,仅需一个简单的加热装置进行孵育。因此,LAMP-TRBIV检测方法在实验室和养殖场检测TRBIV方面具有巨大的应用潜力。