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抗菌肽 Magainin 2 的表面取向:分子动力学模拟和和频产生振动光谱研究。

Surface orientation of magainin 2: molecular dynamics simulation and sum frequency generation vibrational spectroscopic studies.

机构信息

Department of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, Michigan 48109, USA.

出版信息

Langmuir. 2010 Oct 19;26(20):16031-6. doi: 10.1021/la1024394.

Abstract

We combined molecular dynamics based free energy calculations with sum frequency generation (SFG) spectroscopy to study the orientational distribution of solvated peptides near hydrophobic surfaces. Using a simplified atomistic model of the polystyrene (PS) surface, molecular dynamics simulations have been applied to compute the orientational probability of an α-helical peptide, magainin 2, with respect to the PS/water interface. Free energy calculations revealed that the preferred (horizontal) peptide orientation was driven by the favorable interactions between the hydrophobic PS surface and the hydrophobic residues on the helix, and additional simulations examined the importance of small aggregate formation. Concentration-dependent measurements obtained via SFG vibrational spectroscopy suggest that, at very low peptide concentrations, magainin molecules tend to lie down at the PS/solution interface, which correlates well with the simulation results. When the concentration is increased, peptides exhibit behavior not captured by MD simulations using single helical peptides. A combination of simulations and experiments was shown to yield more reliable results with molecular-level insights into interaction between peptides and polymer surfaces.

摘要

我们将基于分子动力学的自由能计算与和频发生(SFG)光谱相结合,研究溶剂化肽在疏水表面附近的取向分布。使用聚苯乙烯(PS)表面的简化原子模型,我们应用分子动力学模拟来计算具有α-螺旋肽,抗菌肽 2(magainin 2)相对于 PS/水界面的取向概率。自由能计算表明,优先(水平)的肽取向是由疏水 PS 表面与螺旋上的疏水残基之间的有利相互作用驱动的,并且额外的模拟研究了小聚集体形成的重要性。通过 SFG 振动光谱获得的浓度依赖性测量表明,在非常低的肽浓度下,magainin 分子倾向于平卧在 PS/溶液界面上,这与模拟结果很好地吻合。当浓度增加时,肽的行为不能用使用单螺旋肽的 MD 模拟来捕捉。结果表明,模拟和实验的结合可以产生更可靠的结果,并对肽与聚合物表面之间的相互作用提供分子水平的见解。

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