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EMDataBank.org: unified data resource for CryoEM.

作者信息

Lawson Catherine L, Baker Matthew L, Best Christoph, Bi Chunxiao, Dougherty Matthew, Feng Powei, van Ginkel Glen, Devkota Batsal, Lagerstedt Ingvar, Ludtke Steven J, Newman Richard H, Oldfield Tom J, Rees Ian, Sahni Gaurav, Sala Raul, Velankar Sameer, Warren Joe, Westbrook John D, Henrick Kim, Kleywegt Gerard J, Berman Helen M, Chiu Wah

机构信息

Department of Chemistry and Chemical Biology and Research Collaboratory for Structural Bioinformatics, Rutgers, The State University of New Jersey, 610 Taylor Road Piscataway, NJ 08854, USA.

出版信息

Nucleic Acids Res. 2011 Jan;39(Database issue):D456-64. doi: 10.1093/nar/gkq880. Epub 2010 Oct 8.

DOI:10.1093/nar/gkq880
PMID:20935055
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3013769/
Abstract

Cryo-electron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. EMDataBank.org, a joint effort of the Protein Data Bank in Europe (PDBe), the Research Collaboratory for Structural Bioinformatics (RCSB) and the National Center for Macromolecular Imaging (NCMI), is a global 'one-stop shop' resource for deposition and retrieval of cryoEM maps, models and associated metadata. The resource unifies public access to the two major archives containing EM-based structural data: EM Data Bank (EMDB) and Protein Data Bank (PDB), and facilitates use of EM structural data of macromolecules and macromolecular complexes by the wider scientific community.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/203cbe272aef/gkq880f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/d778ee8edad6/gkq880f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/7d2f28f485fb/gkq880f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/0cd0d7a54a90/gkq880f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/0d8a582544df/gkq880f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/203cbe272aef/gkq880f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/d778ee8edad6/gkq880f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/7d2f28f485fb/gkq880f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/0cd0d7a54a90/gkq880f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/0d8a582544df/gkq880f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f853/3013769/203cbe272aef/gkq880f5.jpg

相似文献

[1]
EMDataBank.org: unified data resource for CryoEM.

Nucleic Acids Res. 2011-1

[2]
Unified data resource for cryo-EM.

Methods Enzymol. 2010

[3]
Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.

Methods Mol Biol. 2017

[4]
EMDataBank unified data resource for 3DEM.

Nucleic Acids Res. 2016-1-4

[5]
Databases and Archiving for CryoEM.

Methods Enzymol. 2016

[6]
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D.

Protein Sci. 2022-12

[7]
The Protein Data Bank Archive.

Methods Mol Biol. 2021

[8]
Evolution of standardization and dissemination of cryo-EM structures and data jointly by the community, PDB, and EMDB.

J Biol Chem. 2021

[9]
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.

Nucleic Acids Res. 2021-1-8

[10]
PDBe: Protein Data Bank in Europe.

Nucleic Acids Res. 2013-11-27

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[3]
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[4]
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Nano Lett. 2024-4-11

[5]
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[6]
Quantitative analysis of protein dynamics using a deep learning technique combined with experimental cryo-EM density data and MD simulations.

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[7]
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[8]
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[9]
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[10]
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本文引用的文献

[1]
Cryo-electron microscopy reconstructions of two types of wild rabbit hemorrhagic disease viruses characterized the structural features of Lagovirus.

Protein Cell. 2010-2-7

[2]
Analyses of subnanometer resolution cryo-EM density maps.

Methods Enzymol. 2010

[3]
Structure of hepatitis E virion-sized particle reveals an RNA-dependent viral assembly pathway.

J Biol Chem. 2010-8-18

[4]
Hybrid molecular structure of the giant protease tripeptidyl peptidase II.

Nat Struct Mol Biol. 2010-8-1

[5]
Backbone trace of partitivirus capsid protein from electron cryomicroscopy and homology modeling.

Biophys J. 2010-7-21

[6]
4.6A Cryo-EM reconstruction of tobacco mosaic virus from images recorded at 300 keV on a 4k x 4k CCD camera.

J Struct Biol. 2010-6-15

[7]
Structural changes in a marine podovirus associated with release of its genome into Prochlorococcus.

Nat Struct Mol Biol. 2010-6-13

[8]
Structure of an apoptosome-procaspase-9 CARD complex.

Structure. 2010-5-12

[9]
Macromolecular crystal data phased by negative-stained electron-microscopy reconstructions.

Acta Crystallogr D Biol Crystallogr. 2010-5

[10]
Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions.

J Struct Biol. 2010-3-23

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