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Pfam家族PF04016(DUF364)首个代表成员的结构揭示了烯醇化酶和类罗斯曼折叠,它们结合形成一个独特的活性位点,可能在重金属螯合中发挥作用。

Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation.

作者信息

Miller Mitchell D, Aravind L, Bakolitsa Constantina, Rife Christopher L, Carlton Dennis, Abdubek Polat, Astakhova Tamara, Axelrod Herbert L, Chiu Hsiu Ju, Clayton Thomas, Deller Marc C, Duan Lian, Feuerhelm Julie, Grant Joanna C, Han Gye Won, Jaroszewski Lukasz, Jin Kevin K, Klock Heath E, Knuth Mark W, Kozbial Piotr, Krishna S Sri, Kumar Abhinav, Marciano David, McMullan Daniel, Morse Andrew T, Nigoghossian Edward, Okach Linda, Reyes Ron, van den Bedem Henry, Weekes Dana, Xu Qingping, Hodgson Keith O, Wooley John, Elsliger Marc André, Deacon Ashley M, Godzik Adam, Lesley Scott A, Wilson Ian A

机构信息

Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt 10):1167-73. doi: 10.1107/S1744309110007517. Epub 2010 Jul 6.

Abstract

The crystal structure of Dhaf4260 from Desulfitobacterium hafniense DCB-2 was determined by single-wavelength anomalous diffraction (SAD) to a resolution of 2.01 Å using the semi-automated high-throughput pipeline of the Joint Center for Structural Genomics (JCSG) as part of the NIGMS Protein Structure Initiative (PSI). This protein structure is the first representative of the PF04016 (DUF364) Pfam family and reveals a novel combination of two well known domains (an enolase N-terminal-like fold followed by a Rossmann-like domain). Structural and bioinformatic analyses reveal partial similarities to Rossmann-like methyltransferases, with residues from the enolase-like fold combining to form a unique active site that is likely to be involved in the condensation or hydrolysis of molecules implicated in the synthesis of flavins, pterins or other siderophores. The genome context of Dhaf4260 and homologs additionally supports a role in heavy-metal chelation.

摘要

作为美国国立综合医学科学研究所(NIGMS)蛋白质结构计划(PSI)的一部分,利用联合结构基因组学中心(JCSG)的半自动高通量流程,通过单波长反常散射(SAD)确定了来自哈氏脱硫肠状菌DCB-2的Dhaf4260的晶体结构,分辨率为2.01 Å。该蛋白质结构是Pfam家族PF04016(DUF364)的首个代表,揭示了两个著名结构域(一个类似烯醇酶N端的折叠结构,其后是一个类似Rossmann的结构域)的新组合。结构和生物信息学分析揭示了与类似Rossmann甲基转移酶的部分相似性,来自类似烯醇酶折叠结构的残基结合形成一个独特的活性位点,该位点可能参与黄素、蝶呤或其他铁载体合成中相关分子的缩合或水解。Dhaf4260及其同源物的基因组背景进一步支持了其在重金属螯合中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92f2/2954201/24f7a82797a4/f-66-01167-fig1.jpg

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