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X射线诱导的二硫键在原子分辨率下的降解。

X-ray-induced deterioration of disulfide bridges at atomic resolution.

作者信息

Petrova Tatiana, Ginell Stephan, Mitschler Andre, Kim Youngchang, Lunin Vladimir Y, Joachimiak Grazyna, Cousido-Siah Alexandra, Hazemann Isabelle, Podjarny Alberto, Lazarski Krzysztof, Joachimiak Andrzej

机构信息

Structural Biology Center, Biosciences Division, Argonne National Laboratory, Argonne, Illinois 60439, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2010 Oct;66(Pt 10):1075-91. doi: 10.1107/S0907444910033986. Epub 2010 Sep 18.

DOI:10.1107/S0907444910033986
PMID:20944241
Abstract

Overall and site-specific X-ray-induced damage to porcine pancreatic elastase was studied at atomic resolution at temperatures of 100 and 15 K. The experiments confirmed that irradiation causes small movements of protein domains and bound water molecules in protein crystals. These structural changes occur not only at 100 K but also at temperatures as low as 15 K. An investigation of the deterioration of disulfide bridges demonstrated the following. (i) A decrease in the occupancy of S(γ) atoms and the appearance of new cysteine rotamers occur simultaneously. (ii) The occupancy decrease is observed for all S(γ) atoms, while new rotamers arise for some of the cysteine residues; the appearance of new conformations correlates with the accessibility to solvent. (iii) The sum of the occupancies of the initial and new conformations of a cysteine residue is approximately equal to the occupancy of the second cysteine residue in the bridge. (iv) The most pronounced changes occur at doses below 1.4 × 10(7) Gy, with only small changes occurring at higher doses. Comparison of the radiation-induced changes in an elastase crystal at 100 and 15 K suggested that the dose needed to induce a similar level of deterioration of the disulfide bonds and atomic displacements at 15 K to those seen at 100 K is more than two times higher.

摘要

在100K和15K的温度下,以原子分辨率研究了X射线对猪胰弹性蛋白酶的整体及特定部位的损伤。实验证实,辐照会导致蛋白质晶体中蛋白质结构域和结合水分子的微小移动。这些结构变化不仅发生在100K时,在低至15K的温度下也会发生。对二硫键降解的研究表明如下情况。(i) S(γ)原子占有率的降低和新的半胱氨酸旋转异构体的出现同时发生。(ii) 所有S(γ)原子均观察到占有率降低,而一些半胱氨酸残基出现新的旋转异构体;新构象的出现与溶剂可及性相关。(iii) 半胱氨酸残基初始构象和新构象占有率之和大约等于该二硫键中第二个半胱氨酸残基的占有率。(iv) 最显著的变化发生在剂量低于1.4×10⁷ Gy时,在较高剂量下仅发生微小变化。对弹性蛋白酶晶体在100K和15K时辐射诱导变化的比较表明,在15K时诱导二硫键降解和原子位移达到与100K时相似水平所需的剂量高出两倍多。

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