• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

分子动力学中的 Car-Parrinello 振动频率。

Vibrational frequencies in Car-Parrinello molecular dynamics.

机构信息

Department of Chemistry, National University of Singapore, Singapore.

出版信息

Phys Chem Chem Phys. 2010 Dec 7;12(45):14960-6. doi: 10.1039/c0cp00411a. Epub 2010 Oct 15.

DOI:10.1039/c0cp00411a
PMID:20949201
Abstract

Car-Parrinello molecular dynamics (CPMD) are widely used to investigate the dynamical properties of molecular systems. An important issue in such applications is the dependence of dynamical quantities such as molecular vibrational frequencies upon the fictitious orbital mass μ. Although it is known that the correct Born-Oppenheimer dynamics are recovered at zero μ, it is not clear how these dynamical quantities are to be rigorously extracted from CPMD calculations. Our work addresses this issue for vibrational frequencies. We show that when the system is sufficiently close to the ground state the calculated ionic vibrational frequencies are ω(M) = ω(0M)[1 -C(μ/M)] for small μ/M, where ω(0M) is the Born-Oppenheimer ionic frequency, M the ionic mass, and C a constant that depends upon the ion-orbital coupling force constants. Our analysis also provides a quantitative understanding of the orbital oscillation amplitudes, leading to a relationship between the adiabaticity of a system and the ion-orbital coupling constants. In particular, we show that there is a significant systematic dependence of calculated vibrational frequencies upon how close the CPMD trajectory is to the Born-Oppenheimer surface. We verify our analytical results with numerical simulations for N(2), Sn(2), and H/Si(100)-(2×1).

摘要

Car-Parrinello 分子动力学(CPMD)广泛用于研究分子系统的动力学性质。在这些应用中,一个重要的问题是分子振动频率等动力学量对虚构轨道质量μ的依赖性。虽然已知在μ=0 时可以恢复正确的玻恩-奥本海默动力学,但从 CPMD 计算中如何严格提取这些动力学量尚不清楚。我们的工作解决了这个问题,针对的是振动频率。我们表明,当系统足够接近基态时,对于小的μ/M,计算出的离子振动频率为ω(M)=ω(0M)[1 - C(μ/M)],其中ω(0M)是玻恩-奥本海默离子频率,M 是离子质量,C 是一个常数,取决于离子-轨道耦合力常数。我们的分析还提供了对轨道振荡幅度的定量理解,导致系统的绝热性与离子-轨道耦合常数之间存在关系。特别是,我们表明,计算出的振动频率与 CPMD 轨迹与玻恩-奥本海默表面的接近程度之间存在显著的系统依赖性。我们通过对 N(2)、Sn(2)和 H/Si(100)-(2×1)的数值模拟验证了我们的分析结果。

相似文献

1
Vibrational frequencies in Car-Parrinello molecular dynamics.分子动力学中的 Car-Parrinello 振动频率。
Phys Chem Chem Phys. 2010 Dec 7;12(45):14960-6. doi: 10.1039/c0cp00411a. Epub 2010 Oct 15.
2
Ion-orbital coupling in Car-Parrinello calculations of hydrogen-bond vibrational dynamics: case study with the NH3-HCl dimer.离子轨道耦合在 Car-Parrinello 氢键振动动力学计算中的应用:以 NH3-HCl 二聚体为例。
J Chem Phys. 2011 Sep 14;135(10):104107. doi: 10.1063/1.3633273.
3
On the theory underlying the Car-Parrinello method and the role of the fictitious mass parameter.关于Car-Parrinello方法的基础理论及虚拟质量参数的作用。
J Chem Phys. 2006 Jan 28;124(4):044111. doi: 10.1063/1.2162893.
4
Time-Dependent Properties of Liquid Water:  A Comparison of Car-Parrinello and Born-Oppenheimer Molecular Dynamics Simulations.液态水的时间相关性质:Car-Parrinello与玻恩-奥本海默分子动力学模拟的比较
J Chem Theory Comput. 2006 Sep;2(5):1274-81. doi: 10.1021/ct6001913.
5
Curvy-steps approach to constraint-free extended-Lagrangian ab initio molecular dynamics, using atom-centered basis functions: convergence toward Born-Oppenheimer trajectories.采用以原子为中心的基函数的无约束扩展拉格朗日从头算分子动力学的曲线步方法:向玻恩-奥本海默轨迹收敛。
J Chem Phys. 2004 Dec 15;121(23):11542-56. doi: 10.1063/1.1814934.
6
OD vibrations and hydration structure in an Al3+ (aq) solution from a Car-Parrinello molecular-dynamics simulation.基于卡-帕里尼罗分子动力学模拟的Al3+(aq)溶液中的OD振动与水合结构
J Chem Phys. 2006 Mar 14;124(10):104501. doi: 10.1063/1.2131062.
7
Revisiting the vibrational spectra of silicon hydrides on Si(100)-(2x1) surface: What is on the surface when disilane dissociates?重新审视硅氢化物在 Si(100)-(2x1) 表面的振动光谱:二硅烷解离时表面上有什么?
J Chem Phys. 2010 Aug 21;133(7):074708. doi: 10.1063/1.3469978.
8
Car-Parrinello molecular dynamics simulation of Fe 3+ (aq).Fe³⁺(水合离子)的卡-帕里尼罗分子动力学模拟
J Phys Chem B. 2005 Jul 28;109(29):14235-42. doi: 10.1021/jp050186u.
9
Using force-matching to reveal essential differences between density functionals in ab initio molecular dynamics simulations.利用力匹配揭示从头算分子动力学模拟中密度泛函之间的本质差异。
J Chem Phys. 2011 May 21;134(19):194109. doi: 10.1063/1.3591374.
10
Car-Parrinello simulation of an O-H stretching envelope and potential of mean force of an intramolecular hydrogen bonded system: application to a Mannich base in solid state and in vacuum.O-H伸缩包络的Car-Parrinello模拟及分子内氢键体系的平均力势:应用于固态和真空中的曼尼希碱
J Chem Phys. 2007 May 28;126(20):205101. doi: 10.1063/1.2736692.

引用本文的文献

1
Born-Oppenheimer Molecular Dynamics with a Linear Combination of Atomic Orbitals and Hybrid Functionals for Condensed Matter Simulations Made Possible. Theory and Performance for the Microcanonical and Canonical Ensembles.借助原子轨道线性组合和杂化泛函实现凝聚态模拟的玻恩-奥本海默分子动力学。微正则系综和正则系综的理论与性能。
J Chem Theory Comput. 2024 May 14;20(9):3954-3975. doi: 10.1021/acs.jctc.3c01231. Epub 2024 Apr 22.
2
Systematic improvement of a classical molecular model of water.系统改进经典水分子模型。
J Phys Chem B. 2013 Aug 29;117(34):9956-72. doi: 10.1021/jp403802c. Epub 2013 Aug 14.
3
Lagrangian formulation with dissipation of Born-Oppenheimer molecular dynamics using the density-functional tight-binding method.
含耗散的 Born-Oppenheimer 分子动力学的拉格朗日表述,采用密度泛函紧束缚方法。
J Chem Phys. 2011 Jul 28;135(4):044122. doi: 10.1063/1.3605303.