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高温古菌嗜热脂肪芽孢杆菌的非纤维素黏合蛋白。

Noncellulosomal cohesin from the hyperthermophilic archaeon Archaeoglobus fulgidus.

机构信息

Department of Molecular Microbiology and Biotechnology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Ramat Aviv 69978, Israel.

出版信息

Proteins. 2011 Jan;79(1):50-60. doi: 10.1002/prot.22857. Epub 2010 Oct 15.

Abstract

The increasing numbers of published genomes has enabled extensive survey of protein sequences in nature. During the course of our studies on cellulolytic bacteria that produce multienzyme cellulosome complexes designed for efficient degradation of cellulosic substrates, we have investigated the intermodular cohesin-dockerin interaction, which provides the molecular basis for cellulosome assembly. An early search of the genome databases yielded the surprising existence of a dockerin-like sequence and two cohesin-like sequences in the hyperthermophilic noncellulolytic archaeon, Archaeoglobus fulgidus, which clearly contradicts the cellulosome paradigm. Here, we report a biochemical and biophysical analysis, which revealed particularly strong- and specific-binding interactions between these two cohesins and the single dockerin. The crystal structure of one of the recombinant cohesin modules was determined and found to resemble closely the type-I cohesin structure from the cellulosome of Clostridium thermocellum, with certain distinctive features: two of the loops in the archaeal cohesin structure are shorter than those of the C. thermocellum structure, and a large insertion of 27-amino acid residues, unique to the archaeal cohesin, appears to be largely disordered. Interestingly, the cohesin module undergoes reversible dimer and tetramer formation in solution, a property, which has not been observed previously for other cohesins. This is the first description of cohesin and dockerin interactions in a noncellulolytic archaeon and the first structure of an archaeal cohesin. This finding supports the notion that interactions based on the cohesin-dockerin paradigm are of more general occurrence and are not unique to the cellulosome system.

摘要

发表的基因组数量不断增加,使人们能够广泛地对自然界中的蛋白质序列进行调查。在研究能够产生多酶细胞外酶复合物的纤维素分解菌的过程中,我们研究了模块间的黏合蛋白- dockerin 相互作用,这为细胞外酶复合物的组装提供了分子基础。在对基因组数据库进行早期搜索时,我们惊讶地发现,在嗜热非纤维素分解古菌嗜热脂肪土芽孢杆菌中存在一个 dockerin 样序列和两个黏合蛋白样序列,这显然与细胞外酶复合物的范例相矛盾。在这里,我们报告了一项生化和生物物理分析,该分析揭示了这两个黏合蛋白与单个 dockerin 之间特别强且特异性的结合相互作用。一个重组黏合蛋白模块的晶体结构被确定,并发现它与来自纤维梭菌的细胞外酶复合物的 I 型黏合蛋白结构非常相似,具有某些独特的特征:在古菌黏合蛋白结构中,两个环比 C. thermocellum 结构中的环短,并且独特的 27 个氨基酸残基的大插入似乎大部分是无序的。有趣的是,在溶液中,黏合蛋白模块可发生可逆的二聚体和四聚体形成,这是以前在其他黏合蛋白中未观察到的性质。这是首次在非纤维素分解古菌中描述黏合蛋白和 dockerin 相互作用,也是首次描述古菌黏合蛋白的结构。这一发现支持了这样一种观点,即基于黏合蛋白- dockerin 范例的相互作用更为普遍,而不仅仅局限于细胞外酶复合物系统。

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