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甘氨酸溶剂化的第一步:甘氨酸-水配合物。

The first step in glycine solvation: the glycine-water complex.

机构信息

Department of Chemistry and Applied Biosciences, ETH Zurich, 8093 Zurich, Switzerland.

出版信息

J Phys Chem B. 2010 Nov 25;114(46):15075-8. doi: 10.1021/jp107539z. Epub 2010 Oct 22.

DOI:10.1021/jp107539z
PMID:20964428
Abstract

The jet-cooled spontaneous Raman spectrum of a glycine-water complex (Gly + H(2)O), the first step in amino acid hydration, is reported. The low-frequency vibrational spectrum (below 500 cm(-1)) of the solvated molecule is recorded and assigned using quantum chemical data calculated from ab initio (MP2) and DFT (B3LYP, BLYP, PBE0 = PBE1PBE). Anharmonic corrections or Raman and infrared (IR) active vibrations are calculated using second-order perturbation theory at the MP2/6-31+G(d) level. The acquired spectra at medium resolution (hwhm of ~4 cm(-1)) allow different conformers of the glycine-water heterodimer to be distinguished. Three different dimer conformations are observed and identified; selective collision-induced relaxation processes are used to estimate their relative stability. The results are compared with recent theoretical predictions and microwave (MW) spectroscopy data. The premise that the acidic character of the OH group of the carboxylic acid dominates the interaction between water and glycine is confirmed. The addition of a water molecule is found to greatly change the potential energy surface and conformational preferences of H(2)NCH(2)COOH. Water stabilizes conformations in which formation of a closed-ring, H-bonded structure is possible. Simultaneous participation by the carboxyl oxygen of the amino acid in two hydrogen bonds is found to be unfavorable. It may be expected that the addition of extra water molecules could ultimately lead to the stabilization of the Gly zwitterion.

摘要

甘氨酸-水复合物(Gly + H(2)O)的喷射冷却自发拉曼光谱,即氨基酸水合作用的第一步,被报道。记录并使用从头算(MP2)和密度泛函理论(B3LYP、BLYP、PBE0 = PBE1PBE)计算的量子化学数据对溶剂化分子的低频振动光谱(低于 500 cm(-1)) 进行了分配。使用 MP2/6-31+G(d)水平的二级微扰理论计算了非谐修正或拉曼和红外(IR)活性振动。在中等分辨率(半峰全宽约为 4 cm(-1))下获得的光谱允许区分甘氨酸-水杂二聚体的不同构象。观察到并识别了三种不同的二聚体构象;选择性的碰撞诱导弛豫过程用于估计它们的相对稳定性。结果与最近的理论预测和微波(MW)光谱数据进行了比较。证实了羧酸中 OH 基团的酸性特征主导水与甘氨酸之间相互作用的前提。发现添加一个水分子极大地改变了 H(2)NCH(2)COOH 的势能面和构象偏好。水稳定了形成闭环、氢键结构的构象。发现氨基酸的羧基氧同时参与两个氢键是不利的。可以预期,额外水分子的添加最终可能导致 Gly 内盐的稳定。

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