Department of Chemistry and Center for Chemical Physics, University of Florida, Gainesville, Florida 32611-7200, USA.
J Phys Chem A. 2010 May 13;114(18):5919-27. doi: 10.1021/jp1014115.
The hydration of glycine is investigated by comparing the structures of bare glycine to its hydrated complexes, glycine.H(2)O and glycine.(H(2)O)(2). The Fourier transform infrared spectra of glycine and glycine.water complexes, embedded in Ar matrices at 12 K, have been recorded and the results were compared to density functional theory (DFT) calculations. An initial comparison of the experimental spectra was made to the harmonic infrared spectra of putative structures calculated at the MPW1PW91/6-311++G(d,p) level of theory. The results suggest that bare glycine adopts a C(s) symmetry structure (G-1), where the hydrogens of the amino NH(2) hydrogen-bond intramolecularly with the carboxylic acid C horizontal lineO oxygen. Also observed as minor constituents are the next two lowest-energy structures, one in which the carboxylic acid (O-)H group hydrogen-bonds to the amino NH(2) group (G-2), and the other where intramolecular hydrogen bonding occurs between the NH(2) and the carboxylic acid O(-H) groups (G-3). The abundances of these structures are estimated at 84%, 9% and 8%, respectively. The least favored structure, G-3, can be eliminated by annealing the matrix to 35 K. Addition of the first water molecule to G-1 takes place at the carboxylic acid group, with simultaneous hydrogen bonding of the water molecule to the carboxylic acid (C=)O and (O-)H. The results are consistent with the predominance of this structure, although there is evidence for a small amount of a hydrated G-2 structure. Addition of the second water molecule is less definitive, as only a small number of intense infrared modes can be unambiguously assigned to glycine.(H(2)O)(2). Anharmonic frequency calculations based on second-order vibrational perturbation theory have also been carried out. It is shown that such calculations can generate improved estimates (i.e., approximately 2%) of the experimental frequencies for glycine and glycine.H(2)O, provided that the potential energy surfaces are modeled with high-level ab initio approaches (MP2/aug-cc-pVDZ).
甘氨酸的水合作用通过比较裸甘氨酸与其水合复合物甘氨酸.H(2)O 和甘氨酸.(H(2)O)(2)的结构来研究。在 12 K 下,将甘氨酸和甘氨酸水复合物嵌入 Ar 基质中,记录其傅里叶变换红外光谱,并将结果与密度泛函理论 (DFT) 计算进行比较。最初将实验光谱与理论计算的假定结构的谐波红外光谱进行比较,该理论计算采用 MPW1PW91/6-311++G(d,p) 水平。结果表明,裸甘氨酸采用 C(s) 对称结构 (G-1),其中氨基 NH(2)氢与羧酸 C 水平 O 氧分子内氢键。也观察到两个能量较低的结构作为次要成分,其中一个是羧酸 (O-)H 基团与氨基 NH(2)基团氢键 (G-2),另一个是氨基 NH(2)和羧酸 O(-H)基团之间发生分子内氢键 (G-3)。这些结构的丰度分别估计为 84%、9%和 8%。通过将基质退火至 35 K,可以消除最不利的结构 G-3。第一个水分子与 G-1 中的羧酸基团结合,同时水分子与羧酸 (C=)O 和 (O-)H 氢键。结果与该结构的优势一致,尽管有证据表明少量水合 G-2 结构存在。添加第二个水分子不太明确,因为只能明确分配少量强红外模式给甘氨酸.(H(2)O)(2)。还进行了基于二阶振动微扰理论的非谐频率计算。结果表明,通过采用高级从头算方法 (MP2/aug-cc-pVDZ) 对势能面进行建模,可以为甘氨酸和甘氨酸.H(2)O 生成改进的实验频率估计值(即约 2%)。