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沿胃肠道构建代谢生物学空间并评估微生物影响的化学计量学策略。

Chemometric strategy for modeling metabolic biological space along the gastrointestinal tract and assessing microbial influences.

机构信息

Nestlé Research Center, P.O. Box 44, Vers-chez-les-Blanc, CH-1000 Lausanne 26, Switzerland.

出版信息

Anal Chem. 2010 Dec 1;82(23):9803-11. doi: 10.1021/ac102015n. Epub 2010 Oct 29.

DOI:10.1021/ac102015n
PMID:21033673
Abstract

Over the past decade, the analysis of metabolic data with advanced chemometric techniques has offered the potential to explore functional relationships among biological compartments in relation to the structure and function of the intestine. However, the employed methodologies, generally based on regression modeling techniques, have given emphasis to region-specific metabolic patterns, while providing only limited insights into the spatiotemporal metabolic features of the complex gastrointestinal system. Hence, novel approaches are needed to analyze metabolic data to reconstruct the metabolic biological space associated with the evolving structures and functions of an organ such as the gastrointestinal tract. Here, we report the application of multivariate curve resolution (MCR) methodology to model metabolic relationships along the gastrointestinal compartments in relation to its structure and function using data from our previous metabonomic analysis. The method simultaneously summarizes metabolite occurrence and contribution to continuous metabolic signatures of the different biological compartments of the gut tract. This methodology sheds new light onto the complex web of metabolic interactions with gut symbionts that modulate host cell metabolism in surrounding gut tissues. In the future, such an approach will be key to provide new insights into the dynamic onset of metabolic deregulations involved in region-specific gastrointestinal disorders, such as Crohn's disease or ulcerative colitis.

摘要

在过去的十年中,利用先进的化学计量学技术对代谢数据进行分析,为探索与肠道结构和功能相关的生物区室之间的功能关系提供了可能。然而,所采用的方法通常基于回归建模技术,强调特定区域的代谢模式,而对复杂胃肠道系统的时空代谢特征仅提供有限的见解。因此,需要新的方法来分析代谢数据,以重建与胃肠道等器官的不断变化的结构和功能相关的代谢生物学空间。在这里,我们报告了多元曲线分辨 (MCR) 方法的应用,该方法使用我们之前代谢组学分析的数据,根据肠道的结构和功能,对胃肠道各腔室的代谢关系进行建模。该方法同时总结了代谢物的出现及其对肠道不同生物学区室连续代谢特征的贡献。这种方法为与肠道共生菌的复杂代谢相互作用提供了新的认识,这些相互作用调节周围肠道组织中的宿主细胞代谢。在未来,这种方法将是深入了解克罗恩病或溃疡性结肠炎等特定于区域的胃肠道疾病中涉及的代谢失调的动态发生的关键。

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