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六聚体 RNA 解旋酶对 RNA 的重塑作用。

RNA remodeling by hexameric RNA helicases.

机构信息

CNRS UPR4301, Centre de Biophysique Moléculaire, Orléans cedex, France.

出版信息

RNA Biol. 2010 Nov-Dec;7(6):655-66. doi: 10.4161/rna.7.6.13570. Epub 2010 Nov 1.

DOI:10.4161/rna.7.6.13570
PMID:21045542
Abstract

The unwinding of RNA helices and the disruption of RNA-protein complexes are critical steps of cellular metabolism that are carried out by ubiquitous NTP-dependent enzymes named RNA helicases. Here, we review the structures, mechanisms, and biochemical properties of two RNA helicases known to adopt a homo-hexameric ring architecture: the P4 packaging motor of bacteriophage φ8, a Super-Family 4 helicase, and Escherichia coli's transcription termination factor Rho from the Super-Family 5 of helicases. We emphasize the many similarities as well as key differences that characterize the Rho and P4 motor mechanisms and highlight important questions that remain to be addressed.

摘要

RNA 螺旋的解旋和 RNA-蛋白质复合物的破坏是细胞代谢的关键步骤,这些过程是由普遍存在的、依赖 NTP 的酶(称为 RNA 解旋酶)完成的。在这里,我们回顾了两种已知采用同型六聚体环结构的 RNA 解旋酶的结构、机制和生化特性:噬菌体 φ8 的 P4 包装马达,属于 Super-Family 4 解旋酶,以及 Escherichia coli 的转录终止因子 Rho,属于 Super-Family 5 解旋酶。我们强调了 Rho 和 P4 马达机制的许多相似之处和关键差异,并突出了仍然需要解决的重要问题。

相似文献

1
RNA remodeling by hexameric RNA helicases.六聚体 RNA 解旋酶对 RNA 的重塑作用。
RNA Biol. 2010 Nov-Dec;7(6):655-66. doi: 10.4161/rna.7.6.13570. Epub 2010 Nov 1.
2
Testing the steric exclusion model for hexameric helicases: substrate features that alter RNA-DNA unwinding by the transcription termination factor Rho.测试六聚体解旋酶的空间排阻模型:改变转录终止因子Rho的RNA-DNA解旋的底物特征。
Biochemistry. 2006 May 9;45(18):5885-95. doi: 10.1021/bi0600648.
3
Structure and function of hexameric helicases.六聚体解旋酶的结构与功能。
Annu Rev Biochem. 2000;69:651-97. doi: 10.1146/annurev.biochem.69.1.651.
4
Running in reverse: the structural basis for translocation polarity in hexameric helicases.反向运行:六聚体解旋酶中转位极性的结构基础。
Cell. 2009 Oct 30;139(3):523-34. doi: 10.1016/j.cell.2009.08.043.
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Monitoring RNA unwinding by the transcription termination factor Rho from Mycobacterium tuberculosis.监测结核分枝杆菌转录终止因子Rho介导的RNA解旋过程。
Methods Mol Biol. 2015;1259:293-311. doi: 10.1007/978-1-4939-2214-7_18.
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Rho factor: transcription termination in four steps.Rho因子:转录终止分四个步骤。
Curr Biol. 2003 Sep 16;13(18):R714-6. doi: 10.1016/j.cub.2003.08.047.
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RNA packaging device of double-stranded RNA bacteriophages, possibly as simple as hexamer of P4 protein.双链RNA噬菌体的RNA包装装置,可能简单至P4蛋白的六聚体。
J Biol Chem. 2003 Nov 28;278(48):48084-91. doi: 10.1074/jbc.M306928200. Epub 2003 Sep 8.
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Ligand-induced and small-molecule control of substrate loading in a hexameric helicase.六聚体解旋酶中配体诱导及小分子对底物装载的控制
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Packaging motor from double-stranded RNA bacteriophage phi12 acts as an obligatory passive conduit during transcription.来自双链RNA噬菌体phi12的包装马达在转录过程中充当强制性的被动通道。
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Influence of substrate composition on the helicase activity of transcription termination factor Rho: reduced processivity of Rho hexamers during unwinding of RNA-DNA hybrid regions.底物组成对转录终止因子Rho解旋酶活性的影响:Rho六聚体在RNA-DNA杂交区域解旋过程中的持续合成能力降低。
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引用本文的文献

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The bacterial transcription terminator, Rho, functions as an RNA:DNA hybrid (RDH) helicase in vivo.细菌转录终止因子Rho在体内作为一种RNA:DNA杂交体(RDH)解旋酶发挥作用。
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Rho-dependent termination: a bacterial evolutionary capacitor for stress resistance.Rho 依赖性终止:一种细菌抗逆性的进化电容器。
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Rho and riboswitch-dependent regulations of mntP gene expression evade manganese and membrane toxicities.
Rho和核糖开关依赖性对mntP基因表达的调控可规避锰和膜毒性。
J Biol Chem. 2024 Dec;300(12):107967. doi: 10.1016/j.jbc.2024.107967. Epub 2024 Nov 5.
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Rho-dependent termination enables cellular pH homeostasis.Rho 依赖性终止使细胞 pH 平衡。
J Bacteriol. 2024 Jan 25;206(1):e0035623. doi: 10.1128/jb.00356-23. Epub 2024 Jan 3.
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Ring-shaped replicative helicase encircles double-stranded DNA during unwinding.环形复制解旋酶在解开双链 DNA 时环绕双链 DNA。
Nucleic Acids Res. 2019 Dec 2;47(21):11344-11354. doi: 10.1093/nar/gkz893.
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Learning from the Leaders: Gene Regulation by the Transcription Termination Factor Rho.向领导者学习:转录终止因子Rho对基因的调控
Trends Biochem Sci. 2016 Aug;41(8):690-699. doi: 10.1016/j.tibs.2016.05.012. Epub 2016 Jun 17.
7
ATP-dependent motor activity of the transcription termination factor Rho from Mycobacterium tuberculosis.来自结核分枝杆菌的转录终止因子Rho的ATP依赖性运动活性。
Nucleic Acids Res. 2015 Jul 13;43(12):6099-111. doi: 10.1093/nar/gkv505. Epub 2015 May 20.
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Mechanisms of HCV NS3 helicase monitored by optical tweezers.通过光镊监测丙型肝炎病毒NS3解旋酶的机制。
Methods Mol Biol. 2015;1259:229-55. doi: 10.1007/978-1-4939-2214-7_15.
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The RNA-mediated, asymmetric ring regulatory mechanism of the transcription termination Rho helicase decrypted by time-resolved nucleotide analog interference probing (trNAIP).通过时间分辨核苷酸类似物干扰探测(trNAIP)解密的转录终止Rho解旋酶的RNA介导的不对称环调控机制。
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Rarely at rest: RNA helicases and their busy contributions to RNA degradation, regulation and quality control.很少休息:RNA 解旋酶及其在 RNA 降解、调控和质量控制中的繁忙贡献。
RNA Biol. 2013 Jan;10(1):56-70. doi: 10.4161/rna.22270. Epub 2012 Oct 12.