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猫、牛、马和鹿定量PCR检测方法的发育验证。

Developmental validation of feline, bovine, equine, and cervid quantitative PCR assays.

作者信息

Lindquist Christina D, Evans Jeffery J, Wictum Elizabeth J

机构信息

University of California, Davis, 95616, USA.

出版信息

J Forensic Sci. 2011 Jan;56 Suppl 1:S29-35. doi: 10.1111/j.1556-4029.2010.01605.x. Epub 2010 Nov 11.

Abstract

Accurate DNA quantification is essential for optimizing DNA testing and minimizing sample consumption. Real-time quantitative polymerase chain reaction (qPCR) assays have been published for human and canine nuclear DNA, and the need for quantifying other forensically important species was evident. Following the strategy employed for the canine qPCR assay, we developed individual assays to accurately quantify feline, bovine, equine, and cervid nuclear DNA. Each TaqMan-based assay incorporates a genus-specific probe targeting the Melanocortin-1 Receptor gene and includes a piece of synthetic DNA that acts as an internal PCR control for detecting inhibition. Developmental validations were carried out following the revised guidelines of the Scientific Working Group on DNA Analysis Methods with modifications necessary for validation of nonhuman qPCR assays. All assays demonstrated the specificity, sensitivity, stability, reproducibility, accuracy, and precision required for forensic casework. The application of these assays to animal forensic DNA analysis has both conserved laboratory resources and improved genotyping results.

摘要

准确的DNA定量对于优化DNA检测和减少样本消耗至关重要。已经发表了针对人类和犬类核DNA的实时定量聚合酶链反应(qPCR)检测方法,显然需要对其他法医学上重要的物种进行定量。遵循犬类qPCR检测所采用的策略,我们开发了单独的检测方法来准确量化猫、牛、马和鹿的核DNA。每个基于TaqMan的检测方法都包含一个靶向促黑素皮质素-1受体基因的属特异性探针,并包括一段合成DNA,作为检测抑制作用的内部PCR对照。按照DNA分析方法科学工作组的修订指南进行了方法学验证,并对非人类qPCR检测方法的验证进行了必要的修改。所有检测方法都证明了法医案件工作所需的特异性、灵敏度、稳定性、重现性、准确性和精密度。这些检测方法在动物法医DNA分析中的应用既节省了实验室资源,又改善了基因分型结果。

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