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血红素蛋白中从远端到近端的 NO 转化:近端口袋的作用。

Distal-to-proximal NO conversion in hemoproteins: the role of the proximal pocket.

机构信息

Faculty of Health and Life Sciences, University of Liverpool, Liverpool L69 7ZB, UK.

出版信息

J Mol Biol. 2011 Jan 14;405(2):395-409. doi: 10.1016/j.jmb.2010.10.035. Epub 2010 Nov 10.

Abstract

Hemoproteins play central roles in the formation and utilization of nitric oxide (NO) in cellular signaling, as well as in protection against nitrosative stress. Key to heme-nitrosyl function and reactivity is the Fe coordination number (5 or 6). For (five-coordinate) 5c-NO complexes, the potential for NO to bind on either heme face exists, as in the microbial cytochrome c' from Alcaligenes xylosoxidans (AxCYTcp), which forms a stable proximal 5c-NO complex via a distal six-coordinate NO intermediate and a putative dinitrosyl species. Strong parallels between the NO-binding kinetics of AxCYTcp, the eukaryotic NO sensor soluble guanylate cyclase, and the ferrocytochrome c/cardiolipin complex have led to the suggestion that a distal-to-proximal NO switch could contribute to the selective ligand responses in gas-sensing hemoproteins. The proximal NO-binding site in AxCYTcp is close to a conserved basic (Arg124) residue that is postulated to modulate NO reactivity. We have replaced Arg124 by five different amino acids and have determined high-resolution (1.07-1.40 Å) crystallographic structures with and without NO. These, together with kinetic and resonance Raman data, provide new insights into the mechanism of distal-to-proximal heme-NO conversion, including the determinants of Fe-His bond scission. The Arg124Ala variant allowed us to determine the structure of an analog of the previously unobserved key 5c-NO distal intermediate species. The very high resolution structures combined with the extensive spectroscopic and kinetic data have allowed us to provide a fresh insight into heme reactivity towards NO, a reaction that is of wide importance in biology.

摘要

血红素在细胞信号转导中一氧化氮 (NO) 的形成和利用以及抵抗硝化应激方面发挥着核心作用。血红素-亚硝酰基功能和反应性的关键是 Fe 配位数(5 或 6)。对于(五配位)5c-NO 配合物,NO 有可能在血红素的任一面结合,就像来自 Alcaligenes xylosoxidans 的微生物细胞色素 c'(AxCYTcp)一样,它通过远端六配位 NO 中间体和一个假定的双亚硝酰物种形成稳定的近端 5c-NO 配合物。AxCYTcp 的 NO 结合动力学与真核 NO 传感器可溶性鸟苷酸环化酶和亚铁细胞色素 c/心磷脂复合物之间存在强烈的相似性,这导致人们提出,远端到近端的 NO 开关可能有助于气体感应血红素蛋白中选择性配体的反应。AxCYTcp 中的近端 NO 结合位点靠近保守的碱性(Arg124)残基,该残基被推测调节 NO 的反应性。我们已经用五种不同的氨基酸取代了 Arg124,并确定了具有和不具有 NO 的高分辨率(1.07-1.40 Å)晶体结构。这些结构,连同动力学和共振拉曼数据,为远端到近端血红素-NO 转化的机制提供了新的见解,包括 Fe-His 键断裂的决定因素。Arg124Ala 变体使我们能够确定以前未观察到的关键 5c-NO 远端中间物种的类似物的结构。非常高的分辨率结构与广泛的光谱和动力学数据相结合,使我们能够对血红素与 NO 的反应提供新的见解,该反应在生物学中具有广泛的重要性。

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