Ghafoor Dlzar D, Kekilli Demet, Abdullah Gaylany H, Dworkowski Florian S N, Hassan Hamid G, Wilson Michael T, Strange Richard W, Hough Michael A
Faculty of Science and Education Science, University of Sulaimani, Sulaymaniyah, Iraq.
J Biol Inorg Chem. 2015 Sep;20(6):949-56. doi: 10.1007/s00775-015-1278-y. Epub 2015 Jun 23.
Cytochromes c', that occur in methanotrophic, denitrifying and photosynthetic bacteria, form unusual proximal penta-coordinate NO complexes via a hexa-coordinate distal NO intermediate. Their NO binding properties are similar to those of the eukaryotic NO sensor, soluble guanylate cyclase, for which they provide a valuable structural model. Previous studies suggested that hydrogen bonding between the displaced proximal histidine (His120) ligand (following its dissociation from heme due to trans effects from the distally bound NO) and a conserved aspartate residue (Asp121) could play a key role in allowing proximal NO binding to occur. We have characterized three variants of Alcaligenes xylosoxidans cytochrome c' (AXCP) where Asp121 has been replaced by Ala, Ile and Gln, respectively. In all variants, hydrogen bonding between residue 121 and His120 is abolished yet 5-coordinate proximal NO species are still formed. Our data therefore demonstrate that the His120-Asp121 bond is not essential for proximal NO binding although it likely provides an energy minimum for the displaced His ligand. All variants have altered proximal pocket structure relative to native AXCP.
细胞色素c'存在于甲烷营养菌、反硝化菌和光合细菌中,通过六配位的远端NO中间体形成不寻常的近端五配位NO配合物。它们与NO的结合特性类似于真核生物的NO传感器——可溶性鸟苷酸环化酶,细胞色素c'为其提供了一个有价值的结构模型。先前的研究表明,被取代的近端组氨酸(His120)配体(由于远端结合的NO的反式效应而从血红素上解离后)与保守的天冬氨酸残基(Asp121)之间的氢键可能在允许近端NO结合发生中起关键作用。我们对木糖氧化产碱杆菌细胞色素c'(AXCP)的三个变体进行了表征,其中Asp121分别被丙氨酸、异亮氨酸和谷氨酰胺取代。在所有变体中,121位残基与His120之间的氢键都被消除,但仍形成五配位的近端NO物种。因此,我们的数据表明,His120-Asp121键对于近端NO结合不是必需的,尽管它可能为被取代的His配体提供了一个能量最小值。相对于天然AXCP,所有变体的近端口袋结构都发生了改变。