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使用光笼化一氧化氮对血红素蛋白进行时间分辨串联同步加速器和串联飞秒晶体学研究。

Time-resolved serial synchrotron and serial femtosecond crystallography of heme proteins using photocaged nitric oxide.

作者信息

Smyth Peter, Jaho Sofia, Williams Lewis J, Karras Gabriel, Fitzpatrick Ann, Thompson Amy J, Battah Sinan, Axford Danny, Horrell Sam, Lučić Marina, Ishihara Kotone, Kataoka Machika, Matsuura Hiroaki, Shimba Kanji, Tono Kensuke, Tosha Takehiko, Sugimoto Hiroshi, Owada Shigeki, Hough Michael A, Worrall Jonathan A R, Owen Robin L

机构信息

School of Life Sciences, University of Essex, Wivenhoe Park, Colchester, Essex CO4 3SQ, United Kingdom.

Diamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.

出版信息

IUCrJ. 2025 Sep 1;12(Pt 5):582-594. doi: 10.1107/S2052252525006645.

DOI:10.1107/S2052252525006645
PMID:40843530
Abstract

Time-resolved X-ray crystallography is undergoing a renaissance due to the development of serial crystallography at synchrotron and XFEL beamlines. Crucial to such experiments are efficient and effective methods for uniformly initiating time-dependent processes within microcrystals, such as ligand binding, enzymatic reactions or signalling. A widely applicable approach is the use of photocaged substrates, where the photocage is soaked into the crystal in advance and then activated using a laser pulse to provide uniform initiation of the reaction throughout the crystal. This work characterizes photocage release of nitric oxide and binding of this ligand to two heme protein systems, cytochrome c'-β and dye-decolourizing peroxidase B using a fixed target sample delivery system. Laser parameters for photoactivation are systematically explored, and time-resolved structures over timescales ranging from 100 µs to 1.4 s using synchrotron and XFEL beamlines are described. The effective use of this photocage for time-resolved crystallography is demonstrated and appropriate illumination conditions for such experiments are determined.

摘要

由于同步加速器和X射线自由电子激光(XFEL)光束线上串行晶体学的发展,时间分辨X射线晶体学正在复兴。对于此类实验至关重要的是,有高效且有效的方法在微晶内均匀启动与时间相关的过程,例如配体结合、酶促反应或信号传导。一种广泛适用的方法是使用光笼化底物,其中光笼预先浸泡在晶体中,然后用激光脉冲激活,以在整个晶体中均匀启动反应。这项工作使用固定靶样品输送系统,表征了一氧化氮的光笼释放以及该配体与两种血红素蛋白系统(细胞色素c'-β和染料脱色过氧化物酶B)的结合。系统地探索了光激活的激光参数,并描述了使用同步加速器和XFEL光束线在100微秒至1.4秒时间尺度上的时间分辨结构。证明了这种光笼在时间分辨晶体学中的有效应用,并确定了此类实验的合适照明条件。

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本文引用的文献

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The oligomeric states of dye-decolorizing peroxidases from Streptomyces lividans and their implications for mechanism of substrate oxidation.链霉菌丽散色酸还原酶的寡聚状态及其对底物氧化机制的影响。
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