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周期性边界条件下磷脂单层模型的反应性:磷脂酰乙醇胺与乙醛之间席夫碱形成的密度泛函理论研究。

Reactivity of a phospholipid monolayer model under periodic boundary conditions: a density functional theory study of the Schiff base formation between phosphatidylethanolamine and acetaldehyde.

机构信息

Institut d'Investigació en Ciències de la Salut (IUNICS), Departament de Química, Universitat de les Illes Balears, E-07122 Palma de Mallorca, Spain.

出版信息

J Phys Chem B. 2010 Dec 9;114(48):15879-85. doi: 10.1021/jp1088367. Epub 2010 Nov 15.

Abstract

A mechanism for the formation of the Schiff base between an acetaldehyde and an amine-phospholipid monolayer model based on Dmol3/density functional theory calculations under periodic boundary conditions was constructed. This is the first time such a system has been modeled to examine its chemical reactivity at this computation level. Each unit cell contains two phospholipid molecules, one acetaldehyde molecule, and nine water molecules. One of the amine-phospholipid molecules in the cell possesses a neutral amino group that is used to model the nucleophilic attack on the carboxyl group of acetaldehyde, whereas the other has a charged amino group acting as a proton donor. The nine water molecules form a hydrogen bond network along the polar heads of the phospholipids that facilitates very fast proton conduction at the interface. Using periodic boundary conditions afforded proton transfer between different cells. The reaction takes place in two steps, namely, (1) formation of a carbinolamine and (2) its dehydration to the Schiff base. The carbinolamine is the primary reaction intermediate, and dehydration is the rate-determining step of the process, consistent with available experimental evidence for similar reactions. On the basis of the results, the cell membrane surface environment may boost phospholipid glycation via a neighboring catalyst effect.

摘要

构建了基于周期性边界条件下 Dmol3/密度泛函理论计算的乙醛和胺磷脂单层模型之间希夫碱形成的机制。这是首次在该计算水平上对该体系进行建模以研究其化学反应性。每个单元包含两个磷脂分子、一个乙醛分子和九个水分子。单元中的一个胺磷脂分子具有中性氨基基团,用于模拟对乙醛羧基的亲核攻击,而另一个具有带电荷的氨基基团,充当质子供体。九个水分子沿磷脂的极性头形成氢键网络,促进界面处的快速质子传导。使用周期性边界条件实现了不同单元之间的质子转移。反应分两步进行,即(1)形成羟胺,(2)脱水生成希夫碱。羟胺是主要的反应中间体,脱水是该过程的速控步骤,与类似反应的现有实验证据一致。基于这些结果,细胞膜表面环境可能通过相邻催化剂效应促进磷脂糖化。

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