Institute of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, United Kingdom.
PLoS Comput Biol. 2010 Nov 4;6(11):e1000976. doi: 10.1371/journal.pcbi.1000976.
We report a computational approach that integrates structural bioinformatics, molecular modelling and systems biology to construct a drug-target network on a structural proteome-wide scale. The approach has been applied to the genome of Mycobacterium tuberculosis (M.tb), the causative agent of one of today's most widely spread infectious diseases. The resulting drug-target interaction network for all structurally characterized approved drugs bound to putative M.tb receptors, we refer to as the 'TB-drugome'. The TB-drugome reveals that approximately one-third of the drugs examined have the potential to be repositioned to treat tuberculosis and that many currently unexploited M.tb receptors may be chemically druggable and could serve as novel anti-tubercular targets. Furthermore, a detailed analysis of the TB-drugome has shed new light on the controversial issues surrounding drug-target networks [1]-[3]. Indeed, our results support the idea that drug-target networks are inherently modular, and further that any observed randomness is mainly caused by biased target coverage. The TB-drugome (http://funsite.sdsc.edu/drugome/TB) has the potential to be a valuable resource in the development of safe and efficient anti-tubercular drugs. More generally the methodology may be applied to other pathogens of interest with results improving as more of their structural proteomes are determined through the continued efforts of structural biology/genomics.
我们报告了一种计算方法,该方法结合了结构生物信息学、分子建模和系统生物学,在结构蛋白质组范围内构建药物-靶标网络。该方法已应用于结核分枝杆菌(M.tb)的基因组,M.tb 是当今传播最广泛的传染病之一的病原体。由此产生的所有结构特征明确的已批准药物与假定的 M.tb 受体结合的药物-靶标相互作用网络,我们称之为“TB-drugome”。TB-drugome 表明,大约三分之一的受检药物有可能被重新用于治疗结核病,而且许多目前未被利用的 M.tb 受体可能具有化学可药性,并且可以作为新型抗结核靶点。此外,对 TB-drugome 的详细分析揭示了围绕药物-靶标网络的一些有争议的问题[1]-[3]。事实上,我们的结果支持这样一种观点,即药物-靶标网络本质上是模块化的,而且任何观察到的随机性主要是由于目标覆盖存在偏差。TB-drugome(http://funsite.sdsc.edu/drugome/TB)有可能成为开发安全有效的抗结核药物的有价值资源。更一般地说,该方法可以应用于其他感兴趣的病原体,随着结构生物学/基因组学的持续努力,更多的结构蛋白质组被确定,结果将得到改善。