• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于质谱的代谢组学中用于复杂生物流体中代谢物结构鉴定的数据库搜索。

Database searching for structural identification of metabolites in complex biofluids for mass spectrometry-based metabonomics.

作者信息

Kertesz Tzipporah M, Hill Dennis W, Albaugh Daniel R, Hall Lowell H, Hall L Mark, Grant David F

机构信息

Department of Pharmaceutical Sciences, University of Connecticut, 69 North Eagleville Rd, UNIT 3092, Storrs, CT 06269-3092, USA.

出版信息

Bioanalysis. 2009 Dec;1(9):1627-43. doi: 10.4155/bio.09.145.

DOI:10.4155/bio.09.145
PMID:21083108
Abstract

MS and HPLC are commonly used for compound characterization and obtaining structural information; in the field of metabonomics, these two analytical techniques are often combined to characterize unknown endogenous or exogenous metabolites present in complex biological samples. Since the structures of a majority of these metabolites are not actually identified, the result of most metabonomic studies is a list of m/z values and retention times. However, without knowing actual structures, the biological significance of these 'features' cannot be determined. The process of identifying the structures of unknown compounds can be time intensive, costly and frequently requires the use of multiple orthogonal analytical techniques - this laborious procedure seems insurmountable for the long lists of unknowns that must be identified for each study. In addition, the limited sample volume and the extremely low concentration of most endogenous analytes frequently make purification and identification by other instrumentation nearly impossible. This review is intended to explore the problems and progress with current tools that are available for MS-based structure identification for both endogenous and exogenous metabolites.

摘要

质谱(MS)和高效液相色谱(HPLC)常用于化合物表征和获取结构信息;在代谢组学领域,这两种分析技术常被结合起来以表征复杂生物样品中存在的未知内源性或外源性代谢物。由于这些代谢物中的大多数结构实际上并未被鉴定出来,大多数代谢组学研究的结果是一系列质荷比(m/z)值和保留时间。然而,在不知道实际结构的情况下,这些“特征”的生物学意义无法确定。鉴定未知化合物结构的过程可能耗时、成本高,并且经常需要使用多种正交分析技术——对于每项研究都必须鉴定的一长串未知物来说,这个费力的过程似乎难以克服。此外,样本量有限以及大多数内源性分析物的浓度极低,常常使得用其他仪器进行纯化和鉴定几乎不可能。本综述旨在探讨当前可用于基于质谱的内源性和外源性代谢物结构鉴定工具的问题和进展。

相似文献

1
Database searching for structural identification of metabolites in complex biofluids for mass spectrometry-based metabonomics.基于质谱的代谢组学中用于复杂生物流体中代谢物结构鉴定的数据库搜索。
Bioanalysis. 2009 Dec;1(9):1627-43. doi: 10.4155/bio.09.145.
2
Automated pipeline for de novo metabolite identification using mass-spectrometry-based metabolomics.基于质谱代谢组学的从头代谢物鉴定自动化流程。
Anal Chem. 2013 Apr 2;85(7):3576-83. doi: 10.1021/ac303218u. Epub 2013 Mar 21.
3
CE-MS in metabolomics.代谢组学中的毛细管电泳-质谱联用技术
Electrophoresis. 2009 Jan;30(1):276-91. doi: 10.1002/elps.200800512.
4
Comprehensive analytical strategy for biomarker identification based on liquid chromatography coupled to mass spectrometry and new candidate confirmation tools.基于液相色谱-质谱联用和新候选物确认工具的生物标志物识别综合分析策略
Anal Chem. 2009 Sep 15;81(18):7677-94. doi: 10.1021/ac901087t.
5
Strategy of using microsome-based metabolite production to facilitate the identification of endogenous metabolites by liquid chromatography mass spectrometry.利用微粒体代谢产物生成策略,通过液相色谱-质谱联用技术促进内源性代谢物的鉴定。
Anal Chim Acta. 2011 Jan 24;685(1):36-44. doi: 10.1016/j.aca.2010.11.014. Epub 2010 Nov 24.
6
NMR and MS methods for metabonomics.代谢组学的核磁共振和质谱方法。
Methods Mol Biol. 2011;691:385-415. doi: 10.1007/978-1-60761-849-2_24.
7
Computational strategies for metabolite identification in metabolomics.代谢组学中代谢物鉴定的计算策略
Bioanalysis. 2009 Dec;1(9):1579-96. doi: 10.4155/bio.09.138.
8
LC-MS-based metabonomics analysis.基于液相色谱-质谱联用的代谢组学分析。
J Chromatogr B Analyt Technol Biomed Life Sci. 2008 Apr 15;866(1-2):64-76. doi: 10.1016/j.jchromb.2007.10.022. Epub 2007 Oct 22.
9
Mass spectral metabonomics beyond elemental formula: chemical database querying by matching experimental with computational fragmentation spectra.超越元素分子式的质谱代谢组学:通过将实验碎裂光谱与计算碎裂光谱相匹配进行化学数据库查询
Anal Chem. 2008 Jul 15;80(14):5574-82. doi: 10.1021/ac800548g. Epub 2008 Jun 12.
10
Important roles of the hyphenated HPLC-DAD-MS-SPE-NMR technique in metabonomics.高效液相色谱-二极管阵列检测-质谱联用-固相萃取-核磁共振技术在代谢组学中的重要作用。
Magn Reson Chem. 2009 Dec;47 Suppl 1:S157-62. doi: 10.1002/mrc.2513.

引用本文的文献

1
Development of a Reverse Phase HPLC Retention Index Model for Nontargeted Metabolomics Using Synthetic Compounds.基于合成化合物的非靶向代谢组学反相高效液相色谱保留指数模型的建立。
J Chem Inf Model. 2018 Mar 26;58(3):591-604. doi: 10.1021/acs.jcim.7b00496. Epub 2018 Mar 6.
2
A guide to the identification of metabolites in NMR-based metabonomics/metabolomics experiments.基于核磁共振的代谢组学实验中代谢物鉴定指南。
Comput Struct Biotechnol J. 2016 Mar 9;14:135-53. doi: 10.1016/j.csbj.2016.02.005. eCollection 2016.
3
The use of graph matching algorithms to identify biochemical substructures in synthetic chemical compounds: Application to metabolomics.
使用图形匹配算法识别合成化学化合物中的生化子结构:在代谢组学中的应用。
IEEE Int Conf Comput Adv Bio Med Sci. 2012 Feb;2012. doi: 10.1109/ICCABS.2012.6182637.
4
Optimizing artificial neural network models for metabolomics and systems biology: an example using HPLC retention index data.优化用于代谢组学和系统生物学的人工神经网络模型:以高效液相色谱保留指数数据为例
Bioanalysis. 2015;7(8):939-55. doi: 10.4155/bio.15.1.
5
A molecular structure matching approach to efficient identification of endogenous mammalian biochemical structures.一种用于高效识别内源性哺乳动物生化结构的分子结构匹配方法。
BMC Bioinformatics. 2015;16 Suppl 5(Suppl 5):S11. doi: 10.1186/1471-2105-16-S5-S11. Epub 2015 Mar 18.
6
Chemical structure identification in metabolomics: computational modeling of experimental features.代谢组学中的化学结构鉴定:实验特征的计算建模
Comput Struct Biotechnol J. 2013 Mar 1;5:e201302005. doi: 10.5936/csbj.201302005. eCollection 2013.
7
Perspective: a systems approach to diabetes research.观点:糖尿病研究的系统方法。
Front Genet. 2013 Oct 16;4:205. doi: 10.3389/fgene.2013.00205.
8
In silico enzymatic synthesis of a 400,000 compound biochemical database for nontargeted metabolomics.基于计算机的 40 万化合物生化数据库的酶法合成用于非靶向代谢组学。
J Chem Inf Model. 2013 Sep 23;53(9):2483-92. doi: 10.1021/ci400368v. Epub 2013 Sep 12.
9
BioSM: metabolomics tool for identifying endogenous mammalian biochemical structures in chemical structure space.BioSM:用于在化学结构空间中识别内源性哺乳动物生化结构的代谢组学工具。
J Chem Inf Model. 2013 Mar 25;53(3):601-12. doi: 10.1021/ci300512q. Epub 2013 Feb 27.
10
MolFind: a software package enabling HPLC/MS-based identification of unknown chemical structures.MolFind:一款基于 HPLC/MS 的未知化学结构鉴定软件包。
Anal Chem. 2012 Nov 6;84(21):9388-94. doi: 10.1021/ac302048x. Epub 2012 Oct 23.