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Exploring the factors determining the dynamics of different protein folds.
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Evolutionary relationship of two ancient protein superfolds.
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3
Alternate pathways for folding in the flavodoxin fold family revealed by a nucleation-growth model.
J Mol Biol. 2006 May 5;358(3):646-53. doi: 10.1016/j.jmb.2006.02.026. Epub 2006 Mar 3.
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Folding of proteins with a flavodoxin-like architecture.
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Contribution to the prediction of the fold code: application to immunoglobulin and flavodoxin cases.
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Stalled flavodoxin binds its cofactor while fully exposed outside the ribosome.
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Reconstructing the Remote Origins of a Fold Singleton from a Flavodoxin-Like Ancestor.
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Double Electron-Electron Spin Resonance Tracks Flavodoxin Folding.
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Global folding of proteins using a limited number of distance constraints.
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引用本文的文献

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Explicit versus implicit consideration of binding partners in protein-protein complex to elucidate intrinsic dynamics.
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Shared Signature Dynamics Tempered by Local Fluctuations Enables Fold Adaptability and Specificity.
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Similarity in Shape Dictates Signature Intrinsic Dynamics Despite No Functional Conservation in TIM Barrel Enzymes.
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Comparison of the Internal Dynamics of Metalloproteases Provides New Insights on Their Function and Evolution.
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WEBnm@ v2.0: Web server and services for comparing protein flexibility.
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The evolution of protein structures and structural ensembles under functional constraint.
Genes (Basel). 2011 Oct 28;2(4):748-62. doi: 10.3390/genes2040748.
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A phylogenetic analysis of normal modes evolution in enzymes and its relationship to enzyme function.
J Mol Biol. 2012 Sep 21;422(3):442-59. doi: 10.1016/j.jmb.2012.05.028. Epub 2012 May 28.
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The interface of protein structure, protein biophysics, and molecular evolution.
Protein Sci. 2012 Jun;21(6):769-85. doi: 10.1002/pro.2071. Epub 2012 Apr 23.

本文引用的文献

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De novo backbone scaffolds for protein design.
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Probing the "dark matter" of protein fold space.
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Evolutionary conservation of protein vibrational dynamics.
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Prediction of protein structure from ideal forms.
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Dynamic personalities of proteins.
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Web services at the European bioinformatics institute.
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Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations.
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Thorough validation of protein normal mode analysis: a comparative study with essential dynamics.
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Evolutionary conservation of protein backbone flexibility.
J Mol Evol. 2006 Oct;63(4):448-57. doi: 10.1007/s00239-005-0209-x. Epub 2006 Oct 4.
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Decoy models for protein structure comparison score normalisation.
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