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夏威夷红藻生物多样性调查(2006-2010):主要发现概述。

The Hawaiian Rhodophyta Biodiversity Survey (2006-2010): a summary of principal findings.

机构信息

Botany Department, 3190 Maile Way, University of Hawaii, Honolulu, HI 96822, USA.

出版信息

BMC Plant Biol. 2010 Nov 22;10:258. doi: 10.1186/1471-2229-10-258.

Abstract

BACKGROUND

The Hawaiian red algal flora is diverse, isolated, and well studied from a morphological and anatomical perspective, making it an excellent candidate for assessment using a combination of traditional taxonomic and molecular approaches. Acquiring and making these biodiversity data freely available in a timely manner ensures that other researchers can incorporate these baseline findings into phylogeographic studies of Hawaiian red algae or red algae found in other locations.

RESULTS

A total of 1,946 accessions are represented in the collections from 305 different geographical locations in the Hawaiian archipelago. These accessions represent 24 orders, 49 families, 152 genera and 252 species/subspecific taxa of red algae. One order of red algae (the Rhodachlyales) was recognized in Hawaii for the first time and 196 new island distributional records were determined from the survey collections. One family and four genera are reported for the first time from Hawaii, and multiple species descriptions are in progress for newly discovered taxa. A total of 2,418 sequences were generated for Hawaiian red algae in the course of this study--915 for the nuclear LSU marker, 864 for the plastidial UPA marker, and 639 for the mitochondrial COI marker. These baseline molecular data are presented as neighbor-joining trees to illustrate degrees of divergence within and among taxa. The LSU marker was typically most conserved, followed by UPA and COI. Phylogenetic analysis of a set of concatenated LSU, UPA and COI sequences recovered a tree that broadly resembled the current understanding of florideophyte red algal relationships, but bootstrap support was largely absent above the ordinal level. Phylogeographic trends are reported here for some common taxa within the Hawaiian Islands and include examples of those with, as well as without, intraspecific variation.

CONCLUSIONS

The UPA and COI markers were determined to be the most useful of the three and are recommended for inclusion in future algal biodiversity surveys. Molecular data for the survey provide the most extensive assessment of Hawaiian red algal diversity and, in combination with the morphological/anatomical and distributional data collected as part of the project, provide a solid baseline data set for future studies of the flora. The data are freely available via the Hawaiian Algal Database (HADB), which was designed and constructed to accommodate the results of the project. We present the first DNA sequence reference collection for a tropical Pacific seaweed flora, whose value extends beyond Hawaii since many Hawaiian taxa are shared with other tropical areas.

摘要

背景

夏威夷红藻植物区系种类繁多、孤立,从形态学和解剖学的角度来看研究得很好,因此非常适合结合传统分类学和分子方法进行评估。及时获取和提供这些生物多样性数据可确保其他研究人员能够将这些基线发现纳入夏威夷红藻或其他地方发现的红藻的系统地理学研究中。

结果

共收集了来自夏威夷群岛 305 个不同地理位置的 1,946 个标本,这些标本代表了 24 个目、49 个科、152 个属和 252 个种/亚种的红藻。首次在夏威夷确认了一个红藻目(红藻目),并从调查收集的资料中确定了 196 个新的岛屿分布记录。有一个科和四个属是首次报道来自夏威夷,对于新发现的分类群正在进行多个物种描述。在这项研究中,共为夏威夷红藻生成了 2,418 个序列——核 LSU 标记 915 个,质体 UPA 标记 864 个,线粒体 COI 标记 639 个。这些基线分子数据以邻接树的形式呈现,以说明分类群内和分类群之间的分歧程度。LSU 标记通常最保守,其次是 UPA 和 COI。LSU、UPA 和 COI 序列的系统发育分析恢复了一个大致反映当前对叶状红藻关系理解的树,但在目级以上缺乏广泛的支持。本文报告了夏威夷群岛内一些常见分类群的系统地理趋势,包括具有和不具有种内变异的分类群的例子。

结论

UPA 和 COI 标记被确定为最有用的标记,建议将其纳入未来的藻类生物多样性调查中。调查的分子数据提供了对夏威夷红藻多样性的最广泛评估,并与项目收集的形态学/解剖学和分布数据相结合,为该植物区系的未来研究提供了可靠的基线数据集。数据可通过夏威夷藻类数据库(HADB)免费获取,该数据库是专为容纳该项目的结果而设计和构建的。我们提供了热带太平洋海藻植物区系的第一个 DNA 序列参考集,其价值不仅限于夏威夷,因为许多夏威夷分类群与其他热带地区共享。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/63ec/3012605/bd7754637ddc/1471-2229-10-258-1.jpg

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