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All-atom empirical potential for molecular modeling and dynamics studies of proteins.
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Redox-coupled proton transfer in the active site of cytochrome cbb3.
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Mechanism and energetics by which glutamic acid 242 prevents leaks in cytochrome c oxidase.
Biochim Biophys Acta. 2009 Oct;1787(10):1205-14. doi: 10.1016/j.bbabio.2009.04.008. Epub 2009 May 3.
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Free energies for biological electron transfer from QM/MM calculation: method, application and critical assessment.
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Glutamic acid 242 is a valve in the proton pump of cytochrome c oxidase.
Proc Natl Acad Sci U S A. 2008 Apr 29;105(17):6255-9. doi: 10.1073/pnas.0800770105. Epub 2008 Apr 22.
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Heme-copper oxidases use tunneling pathways.
Proc Natl Acad Sci U S A. 2008 Jan 15;105(2):403-4. doi: 10.1073/pnas.0711343105. Epub 2008 Jan 7.
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Nanosecond electron tunneling between the hemes in cytochrome bo3.
Proc Natl Acad Sci U S A. 2007 Dec 26;104(52):20811-4. doi: 10.1073/pnas.0709876105. Epub 2007 Dec 17.
9
Charge parameterization of the metal centers in cytochrome c oxidase.
J Comput Chem. 2008 Apr 15;29(5):753-67. doi: 10.1002/jcc.20835.
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Energy diagrams and mechanism for proton pumping in cytochrome c oxidase.
Biochim Biophys Acta. 2007 Sep;1767(9):1143-56. doi: 10.1016/j.bbabio.2007.06.009. Epub 2007 Jul 12.

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