具有仅侵染悬钩子属植物的致病性的软腐果胶杆菌菌株的基因组序列。
Genome sequence of an Erwinia amylovora strain with pathogenicity restricted to Rubus plants.
机构信息
Agroscope Changins-Wädenswil ACW, Postfach, Schloss, CH-8820 Wädenswil, Switzerland.
出版信息
J Bacteriol. 2011 Feb;193(3):785-6. doi: 10.1128/JB.01352-10. Epub 2010 Dec 3.
Abstract
Here, we present the genome of a strain of Erwinia amylovora, the fire blight pathogen, with pathogenicity restricted to Rubus spp. Comparative genomics of ATCC BAA-2158 with E. amylovora strains from non-Rubus hosts identified significant genetic differences but support the inclusion of this strain within the species E. amylovora.
摘要
在这里，我们呈现了一株韧皮部杆菌（火疫病病原体）的基因组，其致病性仅限于悬钩子属。与非悬钩子属宿主的韧皮部杆菌菌株进行比较基因组学分析，发现了显著的遗传差异，但支持将该菌株归入韧皮部杆菌属。
相似文献
1
Genome sequence of an Erwinia amylovora strain with pathogenicity restricted to Rubus plants.具有仅侵染悬钩子属植物的致病性的软腐果胶杆菌菌株的基因组序列。
J Bacteriol. 2011 Feb;193(3):785-6. doi: 10.1128/JB.01352-10. Epub 2010 Dec 3.
2
Complete genome sequence of the plant pathogen Erwinia amylovora strain ATCC 49946.植物病原菌梨火疫病菌 ATCC49946 全基因组序列。
J Bacteriol. 2010 Apr;192(7):2020-1. doi: 10.1128/JB.00022-10. Epub 2010 Jan 29.
3
Eop1 from a Rubus strain of Erwinia amylovora functions as a host-range limiting factor.来自韧皮部寡养单胞菌的 Eop1 作为宿主范围限制因子起作用。
Phytopathology. 2011 Aug;101(8):935-44. doi: 10.1094/PHYTO-12-10-0339.
4
Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core.12 株梨火疫病菌的比较基因组学研究鉴定出一个具有大型保守核心的泛基因组。
PLoS One. 2013;8(2):e55644. doi: 10.1371/journal.pone.0055644. Epub 2013 Feb 7.
5
Conservation of Erwinia amylovora pathogenicity-relevant genes among Erwinia genomes.欧文氏菌基因组中与梨火疫病菌致病性相关基因的保守性。
Arch Microbiol. 2017 Dec;199(10):1335-1344. doi: 10.1007/s00203-017-1409-7. Epub 2017 Jul 10.
6
Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP 1430 and comparison to other Erwinia spp.火疫病病原菌韧皮部欧文氏菌 CFBP1430 全基因组序列与其他欧文氏菌属的比较
Mol Plant Microbe Interact. 2010 Apr;23(4):384-93. doi: 10.1094/MPMI-23-4-0384.
7
Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora.脂多糖生物合成基因区分了侵染悬钩子和绣线菊属的韧皮部杆菌 Erwinia amylovora 的不同基因型。
Mol Plant Pathol. 2012 Oct;13(8):975-84. doi: 10.1111/j.1364-3703.2012.00807.x. Epub 2012 May 15.
8
Fire blight: applied genomic insights of the pathogen and host.火疫病：病原菌和宿主的应用基因组学研究进展。
Annu Rev Phytopathol. 2012;50:475-94. doi: 10.1146/annurev-phyto-081211-172931. Epub 2012 Jun 11.
9
Genetic characterization of Erwinia amylovora strains by random amplified polymorphic DNA fragments (RAPD).利用随机扩增多态性DNA片段（RAPD）对梨火疫病菌株进行遗传特征分析。
Roum Arch Microbiol Immunol. 2009 Jul-Sep;68(3):166-70.
10
Comparative analysis of the Hrp pathogenicity island of Rubus- and Spiraeoideae-infecting Erwinia amylovora strains identifies the IT region as a remnant of an integrative conjugative element.比较感染悬钩子和梨亚科的果胶杆菌的 Hrp 致病性岛的分析表明 IT 区是整合性 conjugative 元件的残余物。
Gene. 2012 Aug 1;504(1):6-12. doi: 10.1016/j.gene.2012.05.002. Epub 2012 May 11.
引用本文的文献
1
Several New Putative Bacterial ADP-Ribosyltransferase Toxins Are Revealed from In Silico Data Mining, Including the Novel Toxin Vorin, Encoded by the Fire Blight Pathogen .从计算机数据挖掘中发现了几种新的假定细菌 ADP-核糖基转移酶毒素，包括由火疫病病原体编码的新型毒素 Vorin。
Toxins (Basel). 2020 Dec 11;12(12):792. doi: 10.3390/toxins12120792.
2
Draft Genome Sequence of Erwinia psidii, Causal Agent of Bacterial Blight of Guava () and Dieback of Eucalypt ( spp.).番石榴细菌性叶斑病（）和桉树枝枯病（桉属树种）病原菌番石榴欧文氏菌的基因组序列草图
Microbiol Resour Announc. 2019 Jan 31;8(5). doi: 10.1128/MRA.01598-18. eCollection 2019 Jan.
3
Genetic islands in pome fruit pathogenic and non-pathogenic Erwinia species and related plasmids.梨果致病和非致病欧文氏菌属物种及相关质粒中的基因岛。
Front Microbiol. 2015 Aug 28;6:874. doi: 10.3389/fmicb.2015.00874. eCollection 2015.
4
Functions and origin of plasmids in species that are pathogenic to or epiphytically associated with pome fruit trees.对梨果类果树致病或附生相关物种中质粒的功能与起源
Trees (Berl West). 2012;26(1):31-46. doi: 10.1007/s00468-011-0630-2. Epub 2011 Oct 11.
5
Comparative Genomics of Erwinia amylovora and Related Erwinia Species-What do We Learn?《果胶杆菌属和相关果胶杆菌种的比较基因组学——我们能学到什么？》
Genes (Basel). 2011 Sep 15;2(3):627-39. doi: 10.3390/genes2030627.
6
The xylem as battleground for plant hosts and vascular wilt pathogens.木质部：植物宿主与维管束萎蔫病原菌的战场。
Front Plant Sci. 2013 Apr 23;4:97. doi: 10.3389/fpls.2013.00097. eCollection 2013.
7
Comparative genomics of 12 strains of Erwinia amylovora identifies a pan-genome with a large conserved core.12 株梨火疫病菌的比较基因组学研究鉴定出一个具有大型保守核心的泛基因组。
PLoS One. 2013;8(2):e55644. doi: 10.1371/journal.pone.0055644. Epub 2013 Feb 7.
8
Genome sequence of Pectobacterium carotovorum subsp. carotovorum strain PCC21, a pathogen causing soft rot in Chinese cabbage.果胶杆菌亚种胡萝卜软腐果胶亚种 PCC21 菌株的基因组序列，该菌是引起大白菜软腐病的病原菌。
J Bacteriol. 2012 Nov;194(22):6345-6. doi: 10.1128/JB.01583-12.
9
Erwinia amylovora CRISPR elements provide new tools for evaluating strain diversity and for microbial source tracking.果胶杆菌 CRISPR 元件为评估菌株多样性和微生物溯源提供了新工具。
PLoS One. 2012;7(7):e41706. doi: 10.1371/journal.pone.0041706. Epub 2012 Jul 31.
10
Lipopolysaccharide biosynthesis genes discriminate between Rubus- and Spiraeoideae-infective genotypes of Erwinia amylovora.脂多糖生物合成基因区分了侵染悬钩子和绣线菊属的韧皮部杆菌 Erwinia amylovora 的不同基因型。
Mol Plant Pathol. 2012 Oct;13(8):975-84. doi: 10.1111/j.1364-3703.2012.00807.x. Epub 2012 May 15.
本文引用的文献
1
Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae.与梨病原菌梨火疫病菌相比，附生细菌丁香假单胞菌和塔斯曼尼亚假单胞菌的基因组比较。
BMC Genomics. 2010 Jun 22;11:393. doi: 10.1186/1471-2164-11-393.
2
Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP 1430 and comparison to other Erwinia spp.火疫病病原菌韧皮部欧文氏菌 CFBP1430 全基因组序列与其他欧文氏菌属的比较
Mol Plant Microbe Interact. 2010 Apr;23(4):384-93. doi: 10.1094/MPMI-23-4-0384.
3
Complete genome sequence of the plant pathogen Erwinia amylovora strain ATCC 49946.植物病原菌梨火疫病菌 ATCC49946 全基因组序列。
J Bacteriol. 2010 Apr;192(7):2020-1. doi: 10.1128/JB.00022-10. Epub 2010 Jan 29.
4
Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity.火疫病病原菌 Erwinia pyrifoliae DSM 12163T 的全基因组序列和植物致病性的比较基因组分析。
BMC Genomics. 2010 Jan 4;11:2. doi: 10.1186/1471-2164-11-2.
5
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.EDGAR：一个用于原核生物基因组比较分析的软件框架。
BMC Bioinformatics. 2009 May 20;10:154. doi: 10.1186/1471-2105-10-154.
6
The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus Erwinia.塔斯马尼亚欧文氏菌菌株Et1/99的基因组，欧文氏菌属中的一种非致病细菌。
Environ Microbiol. 2008 Sep;10(9):2211-22. doi: 10.1111/j.1462-2920.2008.01639.x. Epub 2008 May 6.
7
Erwinia tasmaniensis sp. nov., a non-phytopathogenic bacterium from apple and pear trees.塔斯马尼亚欧文氏菌新种，一种来自苹果树和梨树的非植物病原菌。
Int J Syst Evol Microbiol. 2006 Dec;56(Pt 12):2937-2943. doi: 10.1099/ijs.0.64032-0.
8
GenDB--an open source genome annotation system for prokaryote genomes.GenDB——一款用于原核生物基因组的开源基因组注释系统。
Nucleic Acids Res. 2003 Apr 15;31(8):2187-95. doi: 10.1093/nar/gkg312.
9
Relatedness of chromosomal and plasmid DNAs of Erwinia pyrifoliae and Erwinia amylovora.梨火疫病菌和苹果火疫病菌的染色体DNA与质粒DNA的相关性
Appl Environ Microbiol. 2002 Dec;68(12):6182-92. doi: 10.1128/AEM.68.12.6182-6192.2002.
10
Complete nucleotide sequence of ubiquitous plasmid pEA29 from Erwinia amylovora strain Ea88: gene organization and intraspecies variation.来自梨火疫病菌株Ea88的泛在质粒pEA29的完整核苷酸序列：基因组织和种内变异
Appl Environ Microbiol. 2000 Nov;66(11):4897-907. doi: 10.1128/AEM.66.11.4897-4907.2000.
Zotero 插件