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沟褶菌科和星裂腹菌科的系统发育关系:来自核和线粒体序列联合贝叶斯分析的证据。

Phylogenetic relationships of Gomphillaceae and Asterothyriaceae: evidence from a combined Bayesian analysis of nuclear and mitochondrial sequences.

机构信息

Department of Botany, Field Museum of Natural History, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496.

出版信息

Mycologia. 2004 Mar-Apr;96(2):283-94. doi: 10.1080/15572536.2005.11832978.

DOI:10.1080/15572536.2005.11832978
PMID:21148855
Abstract

The phylogeny and systematic position of Gomphillaceae was reconstructed using a combined Bayesian analysis of nuclear LSU rDNA and mitochondrial SSU rDNA sequences. Twenty-four partial sequences of 12 taxa (11 Gomphillaceae and one Asterothyriaceae) plus two new sequences of Stictis radiata (Ostropales outgroup) were generated and aligned with the corresponding sequences retrieved from GenBank, resulting in an alignment of 82 taxa that was analyzed using a Bayesian approach with Markov chain Monte Carlo (B/MCMC) methods. Our results confirm Gomphillaceae sensu Vezda and Poelt plus Asterothyriaceae to be a monophyletic group, with an unresolved relationship between the two families. Placement of Gomphillaceae and Asterothyriaceae within Ostropales sensu Kauff and Lutzoni, as sister of Thelotremataceae, also is strongly supported. Alternative hypotheses placing Gomphillaceae in Lecanorales (Cladoniaceae), Agyriales (Baeomycetaceae) or within bitunicate Ascomycota (Arthoniomycetes, Chaetothyriomycetes, Dothideomycetes) were rejected with our dataset. After recent synonymization of Dimerella with Coenogonium (Ostropales: Coenogoniaceae), we propose the new combination Coenogonium pineti (one of our Ostropales outgroup taxa in this analysis).

摘要

采用核 LSU rDNA 和线粒体 SSU rDNA 序列联合贝叶斯分析重建了地衣科的系统发育和系统位置。从 GenBank 中检索到 12 个分类群(11 个地衣科和 1 个 Asterothyriaceae)的 24 个部分序列以及 Stictis radiata(Ostropales 外群)的两个新序列,并与相应的序列进行比对,使用贝叶斯方法与马尔可夫链蒙特卡罗(B/MCMC)方法进行分析。我们的结果证实地衣科 sensu Vezda 和 Poelt 加上 Asterothyriaceae 是一个单系群,两个科之间的关系尚未解决。地衣科和 Asterothyriaceae 在 Ostropales sensu Kauff 和 Lutzoni 中的位置,作为 Thelotremataceae 的姐妹群,也得到了强烈支持。替代假说将地衣科放在 Lecanorales(Cladoniaceae)、Agyriales(Baeomycetaceae)或双囊子囊菌(Arthoniomycetes、Chaetothyriomycetes、Dothideomycetes)中,与我们的数据集不符。最近将 Dimerella 与 Coenogonium(地衣目:Coenogoniaceae)同义化后,我们提出了新的组合 Coenogonium pineti(我们本分析中 Ostropales 外群分类群之一)。

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