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建立具有生物安保意义的舞毒蛾属(鳞翅目:毒蛾科)毒蛾全球性条码文库。

Towards a global barcode library for Lymantria (Lepidoptera: Lymantriinae) tussock moths of biosecurity concern.

机构信息

Forest Sciences, University of British Columbia, Vancouver, British Columbia, Canada.

出版信息

PLoS One. 2010 Dec 9;5(12):e14280. doi: 10.1371/journal.pone.0014280.

Abstract

BACKGROUND

Detecting and controlling the movements of invasive species, such as insect pests, relies upon rapid and accurate species identification in order to initiate containment procedures by the appropriate authorities. Many species in the tussock moth genus Lymantria are significant forestry pests, including the gypsy moth Lymantria dispar L., and consequently have been a focus for the development of molecular diagnostic tools to assist in identifying species and source populations. In this study we expand the taxonomic and geographic coverage of the DNA barcode reference library, and further test the utility of this diagnostic method, both for species/subspecies assignment and for determination of geographic provenance of populations.

METHODOLOGY/PRINCIPAL FINDINGS: Cytochrome oxidase I (COI) barcodes were obtained from 518 individuals and 36 species of Lymantria, including sequences assembled and generated from previous studies, vouchered material in public collections, and intercepted specimens obtained from surveillance programs in Canada. A maximum likelihood tree was constructed, revealing high bootstrap support for 90% of species clusters. Bayesian species assignment was also tested, and resulted in correct assignment to species and subspecies in all instances. The performance of barcoding was also compared against the commonly employed NB restriction digest system (also based on COI); while the latter is informative for discriminating gypsy moth subspecies, COI barcode sequences provide greater resolution and generality by encompassing a greater number of haplotypes across all Lymantria species, none shared between species.

CONCLUSIONS/SIGNIFICANCE: This study demonstrates the efficacy of DNA barcodes for diagnosing species of Lymantria and reinforces the view that the approach is an under-utilized resource with substantial potential for biosecurity and surveillance. Biomonitoring agencies currently employing the NB restriction digest system would gather more information by transitioning to the use of DNA barcoding, a change which could be made relatively seamlessly as the same gene region underlies both protocols.

摘要

背景

为了启动相关部门的控制程序,检测和控制入侵物种(如害虫)的活动需要快速、准确地识别物种。舞毒蛾属的许多物种都是重要的林业害虫,包括舞毒蛾 Lymantria dispar L.,因此一直是开发分子诊断工具以协助识别物种和来源种群的重点。在这项研究中,我们扩展了 DNA 条码参考文库的分类和地理覆盖范围,并进一步测试了这种诊断方法的实用性,包括用于物种/亚种分配以及确定种群地理来源。

方法/主要发现:从 518 个个体和 36 种舞毒蛾中获得了细胞色素氧化酶 I(COI)条码,包括以前研究中组装和生成的序列、公共收藏中的凭证材料以及从加拿大监测计划中获得的截获标本。构建了一个最大似然树,揭示了 90%的物种聚类具有高的引导支持。还测试了贝叶斯物种分配,结果在所有情况下都正确地分配到物种和亚种。条码的性能也与常用的 NB 限制酶消化系统(也基于 COI)进行了比较;虽然后者在区分舞毒蛾亚种方面很有信息,但 COI 条码序列通过包含所有舞毒蛾物种的更多单倍型提供了更高的分辨率和通用性,这些单倍型在物种之间没有共享。

结论/意义:这项研究证明了 DNA 条码在诊断舞毒蛾物种方面的有效性,并强化了这样一种观点,即该方法是一种利用不足但具有巨大潜力的生物安全和监测资源。目前使用 NB 限制酶消化系统的生物监测机构通过过渡到使用 DNA 条码将收集更多信息,这种转变相对无缝,因为两种协议都基于相同的基因区域。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a9c/3000334/68708c8ff344/pone.0014280.g001.jpg

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