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耐热脂肪酶的计算机特性分析。

In silico characterization of thermostable lipases.

机构信息

Department of Biotechnology, Indian Institute of Technology, Guwahati 781039, Assam, India.

出版信息

Extremophiles. 2011 Jan;15(1):89-103. doi: 10.1007/s00792-010-0337-0. Epub 2010 Dec 12.

Abstract

Thermostable lipases are of high priority for industrial applications as they are endowed with the capability of carrying out diversified reactions at elevated temperatures. Extremophiles are their potential source. Sequence and structure annotation of thermostable lipases can elucidate evolution of lipases from their mesophilic counterparts with enhanced thermostability hence better industrial potential. Sequence analysis highlighted the conserved residues in bacterial and fungal thermostable lipases. Higher frequency of AXXXA motif and poly Ala residues in lid domain of thermostable Bacillus lipases were distinguishing characteristics. Comparison of amino acid composition among thermostable and mesostable lipases brought into light the role of neutral, charged and aromatic amino acid residues in enhancement of thermostability. Structural annotation of thermostable lipases with that of mesostable lipases revealed some striking features which are increment of gamma turns in thermostable lipases; being first time reported in our paper, longer beta strands, lesser beta-branched residues in helices, increase in charged-neutral hydrogen bonding pair, hydrophobic-hydrophobic contact and differences in the N-cap and C-cap residues of the α helices. Conclusively, it can be stated that subtle changes in the arrangement of amino acid residues in the tertiary structure of lipases contributes to enhanced thermostability.

摘要

热稳定性脂肪酶在工业应用中具有很高的优先级,因为它们能够在高温下进行多样化的反应。极端微生物是它们的潜在来源。热稳定性脂肪酶的序列和结构注释可以阐明脂肪酶从其嗜温对应物的进化,具有增强的热稳定性,因此具有更好的工业潜力。序列分析突出了细菌和真菌热稳定性脂肪酶中的保守残基。热稳定性芽孢杆菌脂肪酶盖域中 AXXXA 基序和多丙氨酸残基的更高频率是其区别特征。对热稳定性和中稳定性脂肪酶之间的氨基酸组成进行比较,揭示了中性、带电和芳香族氨基酸残基在增强热稳定性中的作用。与中稳定性脂肪酶的结构注释相比,热稳定性脂肪酶的结构注释揭示了一些显著特征,即在热稳定性脂肪酶中增加了γ转角;这是我们首次在论文中报道的特征,更长的β链,螺旋中β支化残基更少,增加了带电-中性氢键对、疏水-疏水接触以及α螺旋中 N 帽和 C 帽残基的差异。总之,可以说脂肪酶三级结构中氨基酸残基排列的微小变化有助于增强热稳定性。

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