Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States.
Biochemistry. 2011 Feb 15;50(6):1053-69. doi: 10.1021/bi101911y. Epub 2011 Jan 21.
Although extensive research has been performed on various cytochrome P450s, especially Cyt P450cam, there is much to be learned about the mechanism of how its functional unit, a heme b ligated by an axial cysteine, is finely tuned for catalysis by its second coordination sphere. Here we study how the hydrogen-bonding network affects the proximal cysteine and the Fe-S(Cys) bond in ferric Cyt P450cam. This is accomplished using low-temperature magnetic circular dichroism (MCD) spectroscopy on wild-type (wt) Cyt P450cam and on the mutants Q360P (pure ferric high-spin at low temperature) and L358P where the "Cys pocket" has been altered (by removing amino acids involved in the hydrogen-bonding network), and Y96W (pure ferric low-spin). The MCD spectrum of Q360P reveals fourteen electronic transitions between 15200 and 31050 cm(-1). Variable-temperature variable-field (VTVH) saturation curves were used to determine the polarizations of these electronic transitions with respect to in-plane (xy) and out-of-plane (z) polarization relative to the heme. The polarizations, oscillator strengths, and TD-DFT calculations were then used to assign the observed electronic transitions. In the lower energy region, prominent bands at 15909 and 16919 cm(-1) correspond to porphyrin (P) → Fe charge transfer (CT) transitions. The band at 17881 cm(-1) has distinct sulfur S(π) → Fe CT contributions. The Q band is observed as a pseudo A-term (derivative shape) at 18604 and 19539 cm(-1). In the case of the Soret band, the negative component of the expected pseudo A-term is split into two features due to mixing with another π → π* and potentially a P → Fe CT excited state. The resulting three features are observed at 23731, 24859, and 25618 cm(-1). Most importantly, the broad, prominent band at 28570 cm(-1) is assigned to the S(σ) → Fe CT transition, whose intensity is generated through a multitude of CT transitions with strong iron character. For wt, Q360P, and L358P, this band occurs at 28724, 28570, and 28620 cm(-1), respectively. The small shift of this feature upon altering the hydrogen bonds to the proximal cysteine indicates that the role of the Cys pocket is not primarily for electronic fine-tuning of the sulfur donor strength but is more for stabilizing the proximal thiolate against external reactants (NO, O(2), H(3)O(+)), and for properly positioning cysteine to coordinate to the iron center. This aspect is discussed in detail.
尽管已经对各种细胞色素 P450 进行了广泛的研究,特别是 Cyt P450cam,但对于其功能单元(由轴向半胱氨酸连接的血红素)如何通过其第二配位球精细调节催化作用,还有很多需要了解。在这里,我们研究了氢键网络如何影响铁 Cyt P450cam 中的近端半胱氨酸和 Fe-S(Cys)键。这是通过使用低温磁圆二色性(MCD)光谱在野生型(wt)Cyt P450cam 以及突变体 Q360P(低温下纯铁高自旋)和 L358P(“Cys 口袋”已改变(通过去除参与氢键网络的氨基酸))和 Y96W(纯铁低自旋)上完成的。Q360P 的 MCD 光谱在 15200 至 31050 cm(-1)之间显示出 14 个电子跃迁。变温变场(VTVH)饱和曲线用于确定这些相对于平面内(xy)和平面外(z)相对于血红素的电子跃迁的极化。然后,使用极化、振子强度和 TD-DFT 计算来分配观察到的电子跃迁。在较低的能量区域,在 15909 和 16919 cm(-1)处的突出峰对应于卟啉(P)→Fe 电荷转移(CT)跃迁。在 17881 cm(-1)处存在明显的硫 S(π)→Fe CT 贡献。Q 带作为 18604 和 19539 cm(-1)处的伪 A 项(导数形状)观察到。在 Soret 带的情况下,由于与另一个π→π*和潜在的 P→Fe CT 激发态混合,预期伪 A 项的负分量被分裂成两个特征。由此产生的三个特征在 23731、24859 和 25618 cm(-1)处观察到。最重要的是,在 28570 cm(-1)处观察到的宽而突出的峰归因于 S(σ)→Fe CT 跃迁,其强度是通过具有强铁特征的多个 CT 跃迁产生的。对于 wt、Q360P 和 L358P,该峰分别在 28724、28570 和 28620 cm(-1)处出现。改变与近端半胱氨酸的氢键后,该特征的小位移表明 Cys 口袋的作用不是主要用于电子微调硫供体强度,而是更用于稳定近端硫醇盐免受外部反应物(NO、O(2)、H(3)O(+))的影响,并正确定位半胱氨酸与铁中心配位。这方面将详细讨论。