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欧洲亚硝化单胞菌和希瓦氏菌中双血红素细胞色素c过氧化物酶的共振拉曼光谱、电子顺磁共振光谱和磁圆二色光谱研究

Resonance Raman, Electron Paramagnetic Resonance, and Magnetic Circular Dichroism Spectroscopic Investigation of Diheme Cytochrome c Peroxidases from Nitrosomonas europaea and Shewanella oneidensis.

作者信息

Wolf Matthew W, Rizzolo Kimberly, Elliott Sean J, Lehnert Nicolai

机构信息

Department of Chemistry and Department of Biophysics , University of Michigan , Ann Arbor , Michigan 48109 , United States.

Department of Chemistry , Boston University , 590 Commonwealth Avenue , Boston , Massachusetts 02215 , United States.

出版信息

Biochemistry. 2018 Nov 13;57(45):6416-6433. doi: 10.1021/acs.biochem.8b00732. Epub 2018 Nov 1.

Abstract

Cytochrome c peroxidases (bCcPs) are diheme enzymes required for the reduction of HO to water in bacteria. There are two classes of bCcPs: one is active in the diferric form (constitutively active), and the other requires the reduction of the high-potential heme (H-heme) before catalysis commences (reductively activated) at the low-potential heme (L-heme). To improve our understanding of the mechanisms and heme electronic structures of these different bCcPs, a constitutively active bCcP from Nitrosomonas europaea ( NeCcP) and a reductively activated bCcP from Shewanella oneidensis ( SoCcP) were characterized in both the diferric and semireduced states by electron paramagnetic resonance (EPR), resonance Raman (rRaman), and magnetic circular dichroism (MCD) spectroscopy. In contrast to some previous crystallographic studies, EPR and rRaman spectra do not indicate the presence of significant amounts of a five-coordinate, high-spin ferric heme in NeCcP or SoCcP in either the diferric or semireduced state in solution. This observation points toward a mechanism of activation in which the active site L-heme is not in a static, five-coordinate state but where the activation is more subtle and likely involves formation of a six-coordinate hydroxo complex, which could then react with hydrogen peroxide in an acid-base-type reaction to create Compound 0, the ferric hydroperoxo complex. This mechanism lies in stark contrast to the diheme enzyme MauG that exhibits a static, five-coordinate open heme site at the peroxidatic heme and that forms a more stable Fe═O intermediate.

摘要

细胞色素c过氧化物酶(bCcPs)是细菌中HO还原为水所必需的双血红素酶。bCcPs有两类:一类在双铁形式下具有活性(组成型活性),另一类在催化开始前需要还原高电位血红素(H-血红素),然后在低电位血红素(L-血红素)处进行催化(还原激活)。为了更好地理解这些不同bCcPs的机制和血红素电子结构,通过电子顺磁共振(EPR)、共振拉曼(rRaman)和磁圆二色性(MCD)光谱对来自欧洲亚硝化单胞菌的组成型活性bCcP(NeCcP)和来自腐败希瓦氏菌的还原激活bCcP(SoCcP)在双铁和半还原状态下进行了表征。与之前的一些晶体学研究不同,EPR和rRaman光谱表明,在溶液中的双铁或半还原状态下,NeCcP或SoCcP中不存在大量五配位、高自旋铁血红素。这一观察结果指向一种激活机制,其中活性位点L-血红素不是处于静态的五配位状态,而是激活更为微妙,可能涉及形成六配位羟基配合物,然后该配合物可以在酸碱型反应中与过氧化氢反应生成化合物0,即氢过氧化铁配合物。这种机制与双血红素酶MauG形成鲜明对比,MauG在过氧化物血红素处表现出静态的五配位开放血红素位点,并形成更稳定的Fe═O中间体。

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