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来自 Glossoscolex paulistus 的巨大血红蛋白的结晶和初步结构分析,分辨率为 3.2Å。

Crystallization and preliminary structural analysis of the giant haemoglobin from Glossoscolex paulistus at 3.2 Å.

机构信息

Centro de Biotecnologia Molecular Estrutural, Instituto de Fisica de São Carlos, Universidade de São Paulo, São Carlos-SP, CEP 13566-590, Brazil.

出版信息

J Synchrotron Radiat. 2011 Jan;18(1):24-8. doi: 10.1107/S090904951002772X. Epub 2010 Nov 5.

Abstract

Glossoscolex paulistus is a free-living earthworm encountered in south-east Brazil. Its oxygen transport requirements are undertaken by a giant extracellular haemoglobin, or erythrocruorin (HbGp), which has an approximate molecular mass of 3.6 MDa and, by analogy with its homologue from Lumbricus terrestris (HbLt), is believed to be composed of a total of 180 polypeptide chains. In the present work the full 3.6 MDa particle in its cyanomet state was purified and crystallized using sodium citrate or PEG8000 as precipitant. The crystals contain one-quarter of the full particle in the asymmetric unit of the I222 cell and have parameters of a = 270.8 Å, b = 320.3 Å and c = 332.4 Å. Diffraction data were collected to 3.15 Å using synchrotron radiation on beamline X29A at the Brookhaven National Laboratory and represent the highest resolution data described to date for similar erythrocruorins. The structure was solved by molecular replacement using a search model corresponding to one-twelfth of its homologue from HbLt. This revealed that HbGp belongs to the type I class of erythrocruorins and provided an interpretable initial electron density map in which many features including the haem groups and disulfide bonds could be identified.

摘要

胶涡蚓是一种自由生活的蚯蚓,分布于巴西东南部。它的氧气运输需求由一种巨大的细胞外血红蛋白或血蓝蛋白(HbGp)承担,其分子量约为 3.6 MDa。与来自赤子爱胜蚓(HbLt)的同源物类似,它被认为由总共 180 条多肽链组成。在本工作中,使用柠檬酸钠或 PEG8000 作为沉淀剂,对处于氰合状态的完整 3.6 MDa 颗粒进行了纯化和结晶。晶体在 I222 细胞的不对称单位中包含四分之一的完整颗粒,其参数为 a = 270.8 Å、b = 320.3 Å 和 c = 332.4 Å。使用布鲁克海文国家实验室 X29A 光束线的同步辐射收集了 3.15 Å 的衍射数据,这是迄今为止类似血蓝蛋白描述的最高分辨率数据。使用来自 HbLt 的同源物的十二分之一的搜索模型通过分子置换解决了结构。这表明 HbGp 属于血蓝蛋白的 I 型,提供了一个可解释的初始电子密度图,其中可以识别许多特征,包括血红素基团和二硫键。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a749/3004248/52d00e145da5/s-18-00024-fig1.jpg

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